Back to Multiple platform build/check report for BioC 3.7
ABCDEF[G]HIJKLMNOPQRSTUVWXYZ

INSTALL report for GenVisR on tokay2

This page was generated on 2018-10-17 08:41:36 -0400 (Wed, 17 Oct 2018).

Package 605/1561HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GenVisR 1.12.1
Zachary Skidmore
Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018)
URL: https://git.bioconductor.org/packages/GenVisR
Branch: RELEASE_3_7
Last Commit: 1a07492
Last Changed Date: 2018-05-24 15:29:37 -0400 (Thu, 24 May 2018)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  ERROR 
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  ERROR  OK 
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  ERROR  OK 

Summary

Package: GenVisR
Version: 1.12.1
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/GenVisR_1.12.1.tar.gz && rm -rf GenVisR.buildbin-libdir && mkdir GenVisR.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GenVisR.buildbin-libdir GenVisR_1.12.1.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL GenVisR_1.12.1.zip && rm GenVisR_1.12.1.tar.gz GenVisR_1.12.1.zip
StartedAt: 2018-10-16 20:07:04 -0400 (Tue, 16 Oct 2018)
EndedAt: 2018-10-16 20:08:56 -0400 (Tue, 16 Oct 2018)
EllapsedTime: 112.0 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/GenVisR_1.12.1.tar.gz && rm -rf GenVisR.buildbin-libdir && mkdir GenVisR.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GenVisR.buildbin-libdir GenVisR_1.12.1.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL GenVisR_1.12.1.zip && rm GenVisR_1.12.1.tar.gz GenVisR_1.12.1.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 2036k  100 2036k    0     0  26.4M      0 --:--:-- --:--:-- --:--:-- 29.6M

install for i386

* installing *source* package 'GenVisR' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'GenVisR'
    finding HTML links ... done
    Clinical-class                          html  
    GMS-class                               html  
    GMS_Virtual-class                       html  
    GMS_v4-class                            html  
    GenVisR                                 html  
    HCC1395_Germline                        html  
    HCC1395_N                               html  
    HCC1395_T                               html  
    Lolliplot-class                         html  
    LucCNseg                                html  
    MutSpectra-class                        html  
    MutationAnnotationFormat-class          html  
    MutationAnnotationFormat_Virtual-class
                                            html  
    MutationAnnotationFormat_v1.0-class     html  
    MutationAnnotationFormat_v2.0-class     html  
    MutationAnnotationFormat_v2.1-class     html  
    MutationAnnotationFormat_v2.2-class     html  
    MutationAnnotationFormat_v2.3-class     html  
    MutationAnnotationFormat_v2.4-class     html  
    PIK3CA                                  html  
    Rainfall-class                          html  
    SNPloci                                 html  
    TvTi                                    html  
    VEP-class                               html  
    VEP_Virtual-class                       html  
    VEP_v88-class                           html  
    Waterfall-class                         html  
    brcaMAF                                 html  
    cnFreq                                  html  
    cnSpec                                  html  
    cnView                                  html  
    compIdent                               html  
    covBars                                 html  
    cytoGeno                                html  
    drawPlot-methods                        html  
    genCov                                  html  
    geneViz                                 html  
    getData-methods                         html  
    getDescription-methods                  html  
    getGrob-methods                         html  
    getHeader-methods                       html  
    getMeta-methods                         html  
    getMutation-methods                     html  
    getPath-methods                         html  
    getPosition-methods                     html  
    getSample-methods                       html  
    getVersion-methods                      html  
    hg19chr                                 html  
    ideoView                                html  
    lohSpec                                 html  
    lohView                                 html  
    lolliplot                               html  
    lolliplot_AA2sidechain                  html  
    lolliplot_buildMain                     html  
    waterfall                               html  
    writeData-methods                       html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'GenVisR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GenVisR' as GenVisR_1.12.1.zip
* DONE (GenVisR)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'GenVisR' successfully unpacked and MD5 sums checked
In R CMD INSTALL