Package: GOsummaries

Version: 2.16.1

Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/GOsummaries_2.16.1.tar.gz && rm -rf GOsummaries.buildbin-libdir && mkdir GOsummaries.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GOsummaries.buildbin-libdir GOsummaries_2.16.1.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL GOsummaries_2.16.1.zip && rm GOsummaries_2.16.1.tar.gz GOsummaries_2.16.1.zip

StartedAt: 2018-10-16 18:59:24 -0400 (Tue, 16 Oct 2018)

EndedAt: 2018-10-16 19:00:17 -0400 (Tue, 16 Oct 2018)

EllapsedTime: 52.5 seconds

RetCode: 0

Status:  OK

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### Running command:
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###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/GOsummaries_2.16.1.tar.gz && rm -rf GOsummaries.buildbin-libdir && mkdir GOsummaries.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GOsummaries.buildbin-libdir GOsummaries_2.16.1.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL GOsummaries_2.16.1.zip && rm GOsummaries_2.16.1.tar.gz GOsummaries_2.16.1.zip
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install for i386

* installing *source* package 'GOsummaries' ...
** libs
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c findCoordinates.cpp -o findCoordinates.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o GOsummaries.dll tmp.def findCoordinates.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/GOsummaries.buildbin-libdir/GOsummaries/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'GOsummaries'
    finding HTML links ... done
    GOsummaries-package                     html  
    add_expression.gosummaries              html  
    add_to_slot.gosummaries                 html  
    customize                               html  
    gosummaries.MArrayLM                    html  
    finding level-2 HTML links ... done

    gosummaries                             html  
    gosummaries.kmeans                      html  
    gosummaries.matrix                      html  
    gosummaries.prcomp                      html  
    metabolomic_example                     html  
    metagenomic_example                     html  
    panel_boxplot                           html  
    plot.gosummaries                        html  
    plotWordcloud                           html  
    tissue_example                          html  
** building package indices
** installing vignettes
   'GOsummaries-basics.Rnw' 
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'GOsummaries' ...
** libs
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c findCoordinates.cpp -o findCoordinates.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o GOsummaries.dll tmp.def findCoordinates.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/GOsummaries.buildbin-libdir/GOsummaries/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GOsummaries' as GOsummaries_2.16.1.zip
* DONE (GOsummaries)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'GOsummaries' successfully unpacked and MD5 sums checked
In R CMD INSTALL