Package: DropletUtils

Version: 1.0.3

Command: rm -rf DropletUtils.buildbin-libdir && mkdir DropletUtils.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DropletUtils.buildbin-libdir DropletUtils_1.0.3.tar.gz

StartedAt: 2018-10-17 06:16:30 -0400 (Wed, 17 Oct 2018)

EndedAt: 2018-10-17 06:18:40 -0400 (Wed, 17 Oct 2018)

EllapsedTime: 130.2 seconds

RetCode: 0

Status:  OK

PackageFile: DropletUtils_1.0.3.zip

PackageFileSize: 3.38 MiB

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###
### Running command:
###
###   rm -rf DropletUtils.buildbin-libdir && mkdir DropletUtils.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DropletUtils.buildbin-libdir DropletUtils_1.0.3.tar.gz
###
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install for i386

* installing *source* package 'DropletUtils' ...
** libs
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/beachmat/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rhdf5lib/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c compute_multinom.cpp -o compute_multinom.o
compute_multinom.cpp: In instantiation of 'SEXPREC* compute_multinom_internal(MAT, SEXP) [with V = Rcpp::Vector<13>; MAT = beachmat::lin_matrix<int, Rcpp::Vector<13> >*; SEXP = SEXPREC*]':
compute_multinom.cpp:35:78:   required from here
compute_multinom.cpp:11:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     if (ambient.size()!=NR) {
                       ^
compute_multinom.cpp: In instantiation of 'SEXPREC* compute_multinom_internal(MAT, SEXP) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; MAT = beachmat::lin_matrix<double, Rcpp::Vector<14, Rcpp::PreserveStorage> >*; SEXP = SEXPREC*]':
compute_multinom.cpp:38:78:   required from here
compute_multinom.cpp:11:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
In file included from C:/Users/biocbuild/bbs-3.7-bioc/R/library/beachmat/include/beachmat/LIN_matrix.h:174:0,
                 from C:/Users/biocbuild/bbs-3.7-bioc/R/library/beachmat/include/beachmat/integer_matrix.h:4,
                 from DropletUtils.h:5,
                 from compute_multinom.cpp:1:
C:/Users/biocbuild/bbs-3.7-bioc/R/library/beachmat/include/beachmat/LIN_methods.h: In instantiation of 'beachmat::const_col_indexed_info<V> beachmat::lin_matrix<T, V>::get_const_col_indexed(size_t, typename V::iterator, size_t, size_t) [with T = int; V = Rcpp::Vector<13>; beachmat::const_col_indexed_info<V> = std::tuple<unsigned int, int*, int*>; typename V::iterator = int*; size_t = unsigned int; typename V::iterator = int*]':
C:/Users/biocbuild/bbs-3.7-bioc/R/library/beachmat/include/beachmat/LIN_methods.h:53:56:   required from 'beachmat::const_col_indexed_info<V> beachmat::lin_matrix<T, V>::get_const_col_indexed(size_t, typename V::iterator) [with T = int; V = Rcpp::Vector<13>; beachmat::const_col_indexed_info<V> = std::tuple<unsigned int, int*, int*>; typename V::iterator = int*; size_t = unsigned int; typename V::iterator = int*]'
compute_multinom.cpp:16:61:   required from 'SEXPREC* compute_multinom_internal(MAT, SEXP) [with V = Rcpp::Vector<13>; MAT = beachmat::lin_matrix<int, Rcpp::Vector<13> >*; SEXP = SEXPREC*]'
compute_multinom.cpp:35:78:   required from here
C:/Users/biocbuild/bbs-3.7-bioc/R/library/beachmat/include/beachmat/LIN_methods.h:58:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     if (indices.size()!=this->get_nrow()) {
                       ^
C:/Users/biocbuild/bbs-3.7-bioc/R/library/beachmat/include/beachmat/LIN_methods.h: In instantiation of 'beachmat::const_col_indexed_info<V> beachmat::lin_matrix<T, V>::get_const_col_indexed(size_t, typename V::iterator, size_t, size_t) [with T = double; V = Rcpp::Vector<14, Rcpp::PreserveStorage>; beachmat::const_col_indexed_info<V> = std::tuple<unsigned int, int*, double*>; typename V::iterator = double*; size_t = unsigned int; typename V::iterator = double*]':
C:/Users/biocbuild/bbs-3.7-bioc/R/library/beachmat/include/beachmat/LIN_methods.h:53:56:   required from 'beachmat::const_col_indexed_info<V> beachmat::lin_matrix<T, V>::get_const_col_indexed(size_t, typename V::iterator) [with T = double; V = Rcpp::Vector<14, Rcpp::PreserveStorage>; beachmat::const_col_indexed_info<V> = std::tuple<unsigned int, int*, double*>; typename V::iterator = double*; size_t = unsigned int; typename V::iterator = double*]'
compute_multinom.cpp:16:61:   required from 'SEXPREC* compute_multinom_internal(MAT, SEXP) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; MAT = beachmat::lin_matrix<double, Rcpp::Vector<14, Rcpp::PreserveStorage> >*; SEXP = SEXPREC*]'
compute_multinom.cpp:38:78:   required from here
C:/Users/biocbuild/bbs-3.7-bioc/R/library/beachmat/include/beachmat/LIN_methods.h:58:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/beachmat/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rhdf5lib/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c downsample_counts.cpp -o downsample_counts.o
downsample_counts.cpp: In function 'bool check_downsampling_mode(size_t, Rcpp::NumericVector, Rcpp::LogicalVector)':
downsample_counts.cpp:60:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
         if (prop.size()!=ncells) {
                        ^
In file included from C:/Users/biocbuild/bbs-3.7-bioc/R/library/beachmat/include/beachmat/LIN_matrix.h:174:0,
                 from C:/Users/biocbuild/bbs-3.7-bioc/R/library/beachmat/include/beachmat/integer_matrix.h:4,
                 from DropletUtils.h:5,
                 from downsample_counts.cpp:1:
C:/Users/biocbuild/bbs-3.7-bioc/R/library/beachmat/include/beachmat/LIN_methods.h: In instantiation of 'beachmat::const_col_indexed_info<V> beachmat::lin_matrix<T, V>::get_const_col_indexed(size_t, typename V::iterator, size_t, size_t) [with T = double; V = Rcpp::Vector<14, Rcpp::PreserveStorage>; beachmat::const_col_indexed_info<V> = std::tuple<unsigned int, int*, double*>; typename V::iterator = double*; size_t = unsigned int; typename V::iterator = double*]':
downsample_counts.cpp:188:1:   required from here
C:/Users/biocbuild/bbs-3.7-bioc/R/library/beachmat/include/beachmat/LIN_methods.h:58:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     if (indices.size()!=this->get_nrow()) {
                       ^
C:/Users/biocbuild/bbs-3.7-bioc/R/library/beachmat/include/beachmat/LIN_methods.h: In instantiation of 'beachmat::const_col_indexed_info<V> beachmat::lin_matrix<T, V>::get_const_col_indexed(size_t, typename V::iterator, size_t, size_t) [with T = int; V = Rcpp::Vector<13>; beachmat::const_col_indexed_info<V> = std::tuple<unsigned int, int*, int*>; typename V::iterator = int*; size_t = unsigned int; typename V::iterator = int*]':
downsample_counts.cpp:188:1:   required from here
C:/Users/biocbuild/bbs-3.7-bioc/R/library/beachmat/include/beachmat/LIN_methods.h:58:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/beachmat/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rhdf5lib/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c find_swapped.cpp -o find_swapped.o
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/beachmat/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rhdf5lib/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c get_cell_barcodes.cpp -o get_cell_barcodes.o
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/beachmat/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rhdf5lib/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c init.cpp -o init.o
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/beachmat/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rhdf5lib/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c load_tenx_to_hdf5.cpp -o load_tenx_to_hdf5.o
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/beachmat/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rhdf5lib/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c montecarlo_pval.cpp -o montecarlo_pval.o
montecarlo_pval.cpp: In function 'SEXPREC* montecarlo_pval(SEXP, SEXP, SEXP, SEXP, SEXP)':
montecarlo_pval.cpp:57:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
                 if (chosen >= ngenes) { chosen=ngenes-1; }
                            ^
montecarlo_pval.cpp:64:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
             if (higher<curlen) { 
                       ^
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/beachmat/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rhdf5lib/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c utils.cpp -o utils.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o DropletUtils.dll tmp.def compute_multinom.o downsample_counts.o find_swapped.o get_cell_barcodes.o init.o load_tenx_to_hdf5.o montecarlo_pval.o utils.o -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/library/beachmat/lib/i386 -lbeachmat -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/library/Rhdf5lib/lib/i386 -lhdf5_cpp -lhdf5 -lszip -lz -lpsapi -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/DropletUtils.buildbin-libdir/DropletUtils/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'DropletUtils'
    finding HTML links ... done
    barcodeRanks                            html  
    defaultDrops                            html  
    downsampleMatrix                        html  
    downsampleReads                         html  
    emptyDrops                              html  
    finding level-2 HTML links ... done

    makeCountMatrix                         html  
    read10xCounts                           html  
    read10xMatrix                           html  
    read10xMolInfo                          html  
    swappedDrops                            html  
    write10xCounts                          html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'DropletUtils' ...
** libs
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/beachmat/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rhdf5lib/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c compute_multinom.cpp -o compute_multinom.o
compute_multinom.cpp: In instantiation of 'SEXPREC* compute_multinom_internal(MAT, SEXP) [with V = Rcpp::Vector<13>; MAT = beachmat::lin_matrix<int, Rcpp::Vector<13> >*; SEXP = SEXPREC*]':
compute_multinom.cpp:35:78:   required from here
compute_multinom.cpp:11:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     if (ambient.size()!=NR) {
                       ^
compute_multinom.cpp: In instantiation of 'SEXPREC* compute_multinom_internal(MAT, SEXP) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; MAT = beachmat::lin_matrix<double, Rcpp::Vector<14, Rcpp::PreserveStorage> >*; SEXP = SEXPREC*]':
compute_multinom.cpp:38:78:   required from here
compute_multinom.cpp:11:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
In file included from C:/Users/biocbuild/bbs-3.7-bioc/R/library/beachmat/include/beachmat/LIN_matrix.h:174:0,
                 from C:/Users/biocbuild/bbs-3.7-bioc/R/library/beachmat/include/beachmat/integer_matrix.h:4,
                 from DropletUtils.h:5,
                 from compute_multinom.cpp:1:
C:/Users/biocbuild/bbs-3.7-bioc/R/library/beachmat/include/beachmat/LIN_methods.h: In instantiation of 'beachmat::const_col_indexed_info<V> beachmat::lin_matrix<T, V>::get_const_col_indexed(size_t, typename V::iterator, size_t, size_t) [with T = int; V = Rcpp::Vector<13>; beachmat::const_col_indexed_info<V> = std::tuple<long long unsigned int, int*, int*>; typename V::iterator = int*; size_t = long long unsigned int; typename V::iterator = int*]':
C:/Users/biocbuild/bbs-3.7-bioc/R/library/beachmat/include/beachmat/LIN_methods.h:53:56:   required from 'beachmat::const_col_indexed_info<V> beachmat::lin_matrix<T, V>::get_const_col_indexed(size_t, typename V::iterator) [with T = int; V = Rcpp::Vector<13>; beachmat::const_col_indexed_info<V> = std::tuple<long long unsigned int, int*, int*>; typename V::iterator = int*; size_t = long long unsigned int; typename V::iterator = int*]'
compute_multinom.cpp:16:61:   required from 'SEXPREC* compute_multinom_internal(MAT, SEXP) [with V = Rcpp::Vector<13>; MAT = beachmat::lin_matrix<int, Rcpp::Vector<13> >*; SEXP = SEXPREC*]'
compute_multinom.cpp:35:78:   required from here
C:/Users/biocbuild/bbs-3.7-bioc/R/library/beachmat/include/beachmat/LIN_methods.h:58:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     if (indices.size()!=this->get_nrow()) {
                       ^
C:/Users/biocbuild/bbs-3.7-bioc/R/library/beachmat/include/beachmat/LIN_methods.h: In instantiation of 'beachmat::const_col_indexed_info<V> beachmat::lin_matrix<T, V>::get_const_col_indexed(size_t, typename V::iterator, size_t, size_t) [with T = double; V = Rcpp::Vector<14, Rcpp::PreserveStorage>; beachmat::const_col_indexed_info<V> = std::tuple<long long unsigned int, int*, double*>; typename V::iterator = double*; size_t = long long unsigned int; typename V::iterator = double*]':
C:/Users/biocbuild/bbs-3.7-bioc/R/library/beachmat/include/beachmat/LIN_methods.h:53:56:   required from 'beachmat::const_col_indexed_info<V> beachmat::lin_matrix<T, V>::get_const_col_indexed(size_t, typename V::iterator) [with T = double; V = Rcpp::Vector<14, Rcpp::PreserveStorage>; beachmat::const_col_indexed_info<V> = std::tuple<long long unsigned int, int*, double*>; typename V::iterator = double*; size_t = long long unsigned int; typename V::iterator = double*]'
compute_multinom.cpp:16:61:   required from 'SEXPREC* compute_multinom_internal(MAT, SEXP) [with V = Rcpp::Vector<14, Rcpp::PreserveStorage>; MAT = beachmat::lin_matrix<double, Rcpp::Vector<14, Rcpp::PreserveStorage> >*; SEXP = SEXPREC*]'
compute_multinom.cpp:38:78:   required from here
C:/Users/biocbuild/bbs-3.7-bioc/R/library/beachmat/include/beachmat/LIN_methods.h:58:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/beachmat/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rhdf5lib/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c downsample_counts.cpp -o downsample_counts.o
downsample_counts.cpp: In function 'bool check_downsampling_mode(size_t, Rcpp::NumericVector, Rcpp::LogicalVector)':
downsample_counts.cpp:60:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
         if (prop.size()!=ncells) {
                        ^
In file included from C:/Users/biocbuild/bbs-3.7-bioc/R/library/beachmat/include/beachmat/LIN_matrix.h:174:0,
                 from C:/Users/biocbuild/bbs-3.7-bioc/R/library/beachmat/include/beachmat/integer_matrix.h:4,
                 from DropletUtils.h:5,
                 from downsample_counts.cpp:1:
C:/Users/biocbuild/bbs-3.7-bioc/R/library/beachmat/include/beachmat/LIN_methods.h: In instantiation of 'beachmat::const_col_indexed_info<V> beachmat::lin_matrix<T, V>::get_const_col_indexed(size_t, typename V::iterator, size_t, size_t) [with T = double; V = Rcpp::Vector<14, Rcpp::PreserveStorage>; beachmat::const_col_indexed_info<V> = std::tuple<long long unsigned int, int*, double*>; typename V::iterator = double*; size_t = long long unsigned int; typename V::iterator = double*]':
downsample_counts.cpp:188:1:   required from here
C:/Users/biocbuild/bbs-3.7-bioc/R/library/beachmat/include/beachmat/LIN_methods.h:58:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     if (indices.size()!=this->get_nrow()) {
                       ^
C:/Users/biocbuild/bbs-3.7-bioc/R/library/beachmat/include/beachmat/LIN_methods.h: In instantiation of 'beachmat::const_col_indexed_info<V> beachmat::lin_matrix<T, V>::get_const_col_indexed(size_t, typename V::iterator, size_t, size_t) [with T = int; V = Rcpp::Vector<13>; beachmat::const_col_indexed_info<V> = std::tuple<long long unsigned int, int*, int*>; typename V::iterator = int*; size_t = long long unsigned int; typename V::iterator = int*]':
downsample_counts.cpp:188:1:   required from here
C:/Users/biocbuild/bbs-3.7-bioc/R/library/beachmat/include/beachmat/LIN_methods.h:58:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/beachmat/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rhdf5lib/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c find_swapped.cpp -o find_swapped.o
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/beachmat/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rhdf5lib/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c get_cell_barcodes.cpp -o get_cell_barcodes.o
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/beachmat/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rhdf5lib/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c init.cpp -o init.o
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/beachmat/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rhdf5lib/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c load_tenx_to_hdf5.cpp -o load_tenx_to_hdf5.o
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/beachmat/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rhdf5lib/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c montecarlo_pval.cpp -o montecarlo_pval.o
montecarlo_pval.cpp: In function 'SEXPREC* montecarlo_pval(SEXP, SEXP, SEXP, SEXP, SEXP)':
montecarlo_pval.cpp:57:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
                 if (chosen >= ngenes) { chosen=ngenes-1; }
                            ^
montecarlo_pval.cpp:64:23: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
             if (higher<curlen) { 
                       ^
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/beachmat/include" -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rhdf5lib/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c utils.cpp -o utils.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o DropletUtils.dll tmp.def compute_multinom.o downsample_counts.o find_swapped.o get_cell_barcodes.o init.o load_tenx_to_hdf5.o montecarlo_pval.o utils.o -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/library/beachmat/lib/x64 -lbeachmat -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/library/Rhdf5lib/lib/x64 -lhdf5_cpp -lhdf5 -lszip -lz -lpsapi -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/DropletUtils.buildbin-libdir/DropletUtils/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'DropletUtils' as DropletUtils_1.0.3.zip
* DONE (DropletUtils)
In R CMD INSTALL
In R CMD INSTALL