Venkatraman E. Seshan
| Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018) |
| URL: https://git.bioconductor.org/packages/DNAcopy |
| Branch: RELEASE_3_7 |
| Last Commit: fe26579 |
| Last Changed Date: 2018-04-30 10:35:00 -0400 (Mon, 30 Apr 2018) |
| Back to Multiple platform build/check report for BioC 3.7 |
|
This page was generated on 2018-10-17 08:46:19 -0400 (Wed, 17 Oct 2018).
| Package 402/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| DNAcopy 1.54.0 Venkatraman E. Seshan
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | [ OK ] | |
| Package: DNAcopy |
| Version: 1.54.0 |
| Command: rm -rf DNAcopy.buildbin-libdir && mkdir DNAcopy.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh DNAcopy_1.54.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R DNAcopy.buildbin-libdir |
| StartedAt: 2018-10-17 01:14:25 -0400 (Wed, 17 Oct 2018) |
| EndedAt: 2018-10-17 01:15:27 -0400 (Wed, 17 Oct 2018) |
| EllapsedTime: 62.3 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: DNAcopy_1.54.0.tgz |
| PackageFileSize: 415.7 KiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf DNAcopy.buildbin-libdir && mkdir DNAcopy.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh DNAcopy_1.54.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R DNAcopy.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=DNAcopy.buildbin-libdir DNAcopy_1.54.0.tar.gz' >>>>>>> * installing *source* package ‘DNAcopy’ ... ** libs gfortran -fPIC -g -O2 -c cbsWtstats.f -o cbsWtstats.o gfortran -fPIC -g -O2 -c cbststats.f -o cbststats.o gfortran -fPIC -g -O2 -c changepoints-wtd.f -o changepoints-wtd.o gfortran -fPIC -g -O2 -c changepoints.f -o changepoints.o gfortran -fPIC -g -O2 -c esegment.f -o esegment.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c flchoose.c -o flchoose.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c fphyper.c -o fphyper.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c fpnorm.c -o fpnorm.o gfortran -fPIC -g -O2 -c getbdry.f -o getbdry.o gfortran -fPIC -g -O2 -c prune.f -o prune.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c rshared.c -o rshared.o gfortran -fPIC -g -O2 -c segmentp.f -o segmentp.o gfortran -fPIC -g -O2 -c smoothCNA.f -o smoothCNA.o gfortran -fPIC -g -O2 -c tailprobs.f -o tailprobs.o clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o DNAcopy.so cbsWtstats.o cbststats.o changepoints-wtd.o changepoints.o esegment.o flchoose.o fphyper.o fpnorm.o getbdry.o prune.o rshared.o segmentp.o smoothCNA.o tailprobs.o -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Users/biocbuild/bbs-3.7-bioc/meat/DNAcopy.buildbin-libdir/DNAcopy/libs ** R ** data *** moving datasets to lazyload DB ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (DNAcopy) >>>>>>> >>>>>>> FIXING LINKS FOR DNAcopy.buildbin-libdir/DNAcopy/libs//DNAcopy.so >>>>>>> install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgcc_s.1.dylib" "DNAcopy.buildbin-libdir/DNAcopy/libs//DNAcopy.so" install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgfortran.3.dylib" "DNAcopy.buildbin-libdir/DNAcopy/libs//DNAcopy.so" install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libreadline.5.2.dylib" "DNAcopy.buildbin-libdir/DNAcopy/libs//DNAcopy.so" install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libreadline.dylib" "DNAcopy.buildbin-libdir/DNAcopy/libs//DNAcopy.so" install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libquadmath.0.dylib" "DNAcopy.buildbin-libdir/DNAcopy/libs//DNAcopy.so" install_name_tool -change "/usr/local/gfortran/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgfortran.3.dylib" "DNAcopy.buildbin-libdir/DNAcopy/libs//DNAcopy.so" install_name_tool -change "/usr/local/gfortran/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libquadmath.0.dylib" "DNAcopy.buildbin-libdir/DNAcopy/libs//DNAcopy.so"