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INSTALL report for DEGreport on tokay2

This page was generated on 2018-10-17 08:38:45 -0400 (Wed, 17 Oct 2018).

Package 363/1561HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
DEGreport 1.16.0
Lorena Pantano
Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018)
URL: https://git.bioconductor.org/packages/DEGreport
Branch: RELEASE_3_7
Last Commit: bfe4ccb
Last Changed Date: 2018-04-30 10:35:33 -0400 (Mon, 30 Apr 2018)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: DEGreport
Version: 1.16.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/DEGreport_1.16.0.tar.gz && rm -rf DEGreport.buildbin-libdir && mkdir DEGreport.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DEGreport.buildbin-libdir DEGreport_1.16.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL DEGreport_1.16.0.zip && rm DEGreport_1.16.0.tar.gz DEGreport_1.16.0.zip
StartedAt: 2018-10-16 20:36:19 -0400 (Tue, 16 Oct 2018)
EndedAt: 2018-10-16 20:37:46 -0400 (Tue, 16 Oct 2018)
EllapsedTime: 86.5 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/DEGreport_1.16.0.tar.gz && rm -rf DEGreport.buildbin-libdir && mkdir DEGreport.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DEGreport.buildbin-libdir DEGreport_1.16.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL DEGreport_1.16.0.zip && rm DEGreport_1.16.0.tar.gz DEGreport_1.16.0.zip
###
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100 16.3M  100 16.3M    0     0  78.8M      0 --:--:-- --:--:-- --:--:-- 81.0M

install for i386

* installing *source* package 'DEGreport' ...
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'DEGreport'
    finding HTML links ... done
    DEGSet                                  html  
    DEGreport-deprecated                    html  
    createReport                            html  
    deg                                     html  
    degCheckFactors                         html  
    degComps                                html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp29RQqT/R.INSTALL24f8341d62fe/DEGreport/man/degComps.Rd:26: file link 'resultsNames' in package 'DESeq2' does not exist and so has been treated as a topic
    degCorCov                               html  
    degCovariates                           html  
    degDefault                              html  
    degFilter                               html  
    degMB                                   html  
    degMDS                                  html  
    degMV                                   html  
    degMean                                 html  
    degMerge                                html  
    degObj                                  html  
    degPCA                                  html  
    degPatterns                             html  
    finding level-2 HTML links ... done

    degPlot                                 html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp29RQqT/R.INSTALL24f8341d62fe/DEGreport/man/degPlot.Rd:41: file link 'scale_color_brewer' in package 'ggplot2' does not exist and so has been treated as a topic
    degPlotWide                             html  
    degQC                                   html  
    degResults                              html  
    degSignature                            html  
    degSummary                              html  
    degVB                                   html  
    degVar                                  html  
    degVolcano                              html  
    geneInfo                                html  
    geom_cor                                html  
    humanGender                             html  
    plotMA                                  html  
    significants                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'DEGreport' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'DEGreport' as DEGreport_1.16.0.zip
* DONE (DEGreport)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'DEGreport' successfully unpacked and MD5 sums checked
In R CMD INSTALL