Package: DECIPHER

Version: 2.8.1

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:DECIPHER.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings DECIPHER_2.8.1.tar.gz

StartedAt: 2018-10-16 20:49:02 -0400 (Tue, 16 Oct 2018)

EndedAt: 2018-10-16 20:55:17 -0400 (Tue, 16 Oct 2018)

EllapsedTime: 375.4 seconds

RetCode: 0

Status:  OK

CheckDir: DECIPHER.Rcheck

Warnings: 0

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###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:DECIPHER.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings DECIPHER_2.8.1.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.7-bioc/meat/DECIPHER.Rcheck’
* using R version 3.5.1 Patched (2018-07-12 r74967)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘DECIPHER/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘DECIPHER’ version ‘2.8.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘DECIPHER’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is  9.2Mb
  sub-directories of 1Mb or more:
    data      6.2Mb
    extdata   1.4Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
DesignSignatures: no visible binding for global variable ‘deltaHrules’
IdTaxa: no visible binding for global variable ‘L’
Undefined global functions or variables:
  L deltaHrules
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                     user system elapsed
AlignSeqs          34.751  0.198  35.274
PredictDBN         29.054  0.161  29.395
BrowseSeqs         28.220  0.253  28.652
CorrectFrameshifts 28.283  0.134  28.550
StaggerAlignment   21.984  0.106  22.233
IdTaxa             12.807  0.409  13.288
AlignTranslation   11.487  0.123  11.721
Array2Matrix        7.519  0.042   7.630
DesignArray         7.191  0.049   7.277
TileSeqs            6.768  0.017   6.847
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 3 NOTEs
See
  ‘/Users/biocbuild/bbs-3.7-bioc/meat/DECIPHER.Rcheck/00check.log’
for details.

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### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL DECIPHER
###
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* installing to library ‘/Library/Frameworks/R.framework/Versions/3.5/Resources/library’
* installing *source* package ‘DECIPHER’ ...
** libs
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Biostrings/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/S4Vectors/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/IRanges/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/XVector/include" -I/usr/local/include  -fopenmp -fPIC  -Wall -g -O2  -c AlignProfiles.c -o AlignProfiles.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Biostrings/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/S4Vectors/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/IRanges/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/XVector/include" -I/usr/local/include  -fopenmp -fPIC  -Wall -g -O2  -c AssignIndels.c -o AssignIndels.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Biostrings/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/S4Vectors/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/IRanges/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/XVector/include" -I/usr/local/include  -fopenmp -fPIC  -Wall -g -O2  -c Biostrings_stubs.c -o Biostrings_stubs.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Biostrings/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/S4Vectors/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/IRanges/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/XVector/include" -I/usr/local/include  -fopenmp -fPIC  -Wall -g -O2  -c CalculateDeltaG.c -o CalculateDeltaG.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Biostrings/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/S4Vectors/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/IRanges/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/XVector/include" -I/usr/local/include  -fopenmp -fPIC  -Wall -g -O2  -c CalculateFISH.c -o CalculateFISH.o
CalculateFISH.c:26:3: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                -11.5, -7.8, -7, -8.3,
                ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                {                    }
CalculateFISH.c:27:3: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                -10.4, -12.8, -16.3, -9.1,
                ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                {                        }
CalculateFISH.c:28:3: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                -8.6, -8, -9.3, -5.9,
                ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                {                   }
CalculateFISH.c:29:3: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                -7.8, -5.5, -9, -7.8
                ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                {                   }
CalculateFISH.c:32:3: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                -36.4, -21.6, -19.7, -23.9,
                ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                {                         }
CalculateFISH.c:33:3: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                -28.4, -31.9, -47.1, -23.5,
                ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                {                         }
CalculateFISH.c:34:3: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                -22.9, -17.1, -23.2, -12.3,
                ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                {                         }
CalculateFISH.c:35:3: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                -23.2, -13.5, -26.1, -21.9
                ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                {                         }
CalculateFISH.c:38:3: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                -7.9, -8.4, -7.8, -7.2,
                ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                {                     }
CalculateFISH.c:39:3: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                -8.5, -8, -10.6, -7.8,
                ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                {                    }
CalculateFISH.c:40:3: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                -8.2, -9.8, -8, -8.4,
                ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                {                   }
CalculateFISH.c:41:3: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                -7.2, -8.2, -8.5, -7.9
                ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                {                     }
CalculateFISH.c:44:3: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                -22.2, -22.4, -21, -20.4,
                ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                {                       }
CalculateFISH.c:45:3: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                -22.7, -19.9, -27.2, -21,
                ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                {                       }
CalculateFISH.c:46:3: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                -22.2, -24.4, -19.9, -22.4,
                ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                {                         }
CalculateFISH.c:47:3: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                -21.3, -22.2, -22.7, -22.2
                ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                {                         }
CalculateFISH.c:50:3: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                -6.6, -10.17, -7.65, -5.76,
                ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                {                         }
CalculateFISH.c:51:3: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                -10.56, -12.21, -7.95, -7.65,
                ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                {                           }
CalculateFISH.c:52:3: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                -13.37, -14.21, -12.21, -10.17,
                ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                {                             }
CalculateFISH.c:53:3: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                -8.11, -13.37, -10.56, -6.6
                ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                {                          }
CalculateFISH.c:56:3: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                -18.38, -26.03, -19.18, -15.67,
                ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                {                             }
CalculateFISH.c:57:3: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                -28.25, -30.02, -19.18, -19.18,
                ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                {                             }
CalculateFISH.c:58:3: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                -35.68, -34.85, -30.02, -26.03,
                ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                {                             }
CalculateFISH.c:59:3: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                -22.59, -35.68, -28.25, -18.38
                ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                {                             }
24 warnings generated.
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Biostrings/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/S4Vectors/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/IRanges/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/XVector/include" -I/usr/local/include  -fopenmp -fPIC  -Wall -g -O2  -c ChainSegments.c -o ChainSegments.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Biostrings/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/S4Vectors/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/IRanges/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/XVector/include" -I/usr/local/include  -fopenmp -fPIC  -Wall -g -O2  -c Cluster.c -o Cluster.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Biostrings/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/S4Vectors/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/IRanges/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/XVector/include" -I/usr/local/include  -fopenmp -fPIC  -Wall -g -O2  -c ClusterML.c -o ClusterML.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Biostrings/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/S4Vectors/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/IRanges/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/XVector/include" -I/usr/local/include  -fopenmp -fPIC  -Wall -g -O2  -c CommonGaps.c -o CommonGaps.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Biostrings/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/S4Vectors/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/IRanges/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/XVector/include" -I/usr/local/include  -fopenmp -fPIC  -Wall -g -O2  -c Compositions.c -o Compositions.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Biostrings/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/S4Vectors/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/IRanges/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/XVector/include" -I/usr/local/include  -fopenmp -fPIC  -Wall -g -O2  -c Compression.c -o Compression.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Biostrings/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/S4Vectors/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/IRanges/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/XVector/include" -I/usr/local/include  -fopenmp -fPIC  -Wall -g -O2  -c ConsensusSequence.c -o ConsensusSequence.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Biostrings/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/S4Vectors/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/IRanges/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/XVector/include" -I/usr/local/include  -fopenmp -fPIC  -Wall -g -O2  -c ConsolidateGaps.c -o ConsolidateGaps.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Biostrings/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/S4Vectors/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/IRanges/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/XVector/include" -I/usr/local/include  -fopenmp -fPIC  -Wall -g -O2  -c DesignProbes.c -o DesignProbes.o
DesignProbes.c:71:3: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                -0.816507461,-2.5401714,-1.647430026,-1.184658548
                ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                {                                                }
DesignProbes.c:72:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,-1.854740485,-2.479102613,-2.826248182,-1.647430026
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                 {                                                  }
DesignProbes.c:73:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,-2.48761723,-4.694133177,-2.479102613,-2.5401714
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                 {                                               }
DesignProbes.c:74:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,-0.495794417,-2.48761723,-1.854740485,-0.816507461
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                 {                                                 }
DesignProbes.c:78:3: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                -0.141370102,-0.439805276,-0.285236035,-0.205111781
                ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                {                                                  }
DesignProbes.c:79:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,-0.321129768,-0.429231826,-0.48933661,-0.285236035
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                 {                                                 }
DesignProbes.c:80:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,-0.430706047,-0.812742218,-0.429231826,-0.439805276
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                 {                                                  }
DesignProbes.c:81:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,-0.085841845,-0.430706047,-0.321129768,-0.141370102
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                 {                                                  }
DesignProbes.c:85:3: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                0,0,0,0
                ^˜˜˜˜˜˜
                {      }
DesignProbes.c:86:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,1.545032445,1.254355018,1.491691514,1.329138183
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                 {                                              }
DesignProbes.c:87:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,1.150635633,0.582415494,1.075877275,1.187937642
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                 {                                              }
DesignProbes.c:88:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,1.203555051,1.001540513,0.864287715,0.717125848
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                 {                                              }
DesignProbes.c:89:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,0.75,0.65,0.69,0.78
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                 {                  }
DesignProbes.c:85:3: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                0,0,0,0
                ^˜˜˜˜˜˜
DesignProbes.c:90:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,0.630005348,0.18553379,0.730763505,0.709272397
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                 {                                             }
DesignProbes.c:91:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,0,0,0,0
                 ^˜˜˜˜˜˜
                 {      }
DesignProbes.c:92:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,0.856582783,-0.143236405,0.716721488,0.603652831
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                 {                                               }
DesignProbes.c:93:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,0.851622883,0.653168672,0.676545316,1.187937642
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                 {                                              }
DesignProbes.c:94:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,0.75,0.65,0.69,0.78
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                 {                  }
DesignProbes.c:90:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,0.630005348,0.18553379,0.730763505,0.709272397
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
DesignProbes.c:95:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,1.231861002,0.746214538,1.087821916,0.989140748
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                 {                                              }
DesignProbes.c:96:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,1.822113278,1.270687029,1.336192565,1.364584949
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                 {                                              }
DesignProbes.c:97:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,0,0,0,0
                 ^˜˜˜˜˜˜
                 {      }
DesignProbes.c:98:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,1.443665704,1.385046493,1.256013166,1.329138183
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                 {                                              }
DesignProbes.c:99:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,0.75,0.65,0.69,0.78
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                 {                  }
DesignProbes.c:95:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,1.231861002,0.746214538,1.087821916,0.989140748
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
DesignProbes.c:100:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,1.478009492,0.882097231,1.20450984,1.061002478
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                 {                                             }
DesignProbes.c:101:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,1.496720812,0.846496194,0.967868114,0.989140748
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                 {                                              }
DesignProbes.c:102:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,0.766581547,-0.024857805,0.50754303,0.709272397
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                 {                                              }
DesignProbes.c:103:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,0,0,0,0
                 ^˜˜˜˜˜˜
                 {      }
DesignProbes.c:104:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,0.75,0.65,0.69,0.78
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                 {                  }
DesignProbes.c:100:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,1.478009492,0.882097231,1.20450984,1.061002478
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
DesignProbes.c:105:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,0.75,0.65,0.69,0.78
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                 {                  }
DesignProbes.c:106:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,0.75,0.65,0.69,0.78
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                 {                  }
DesignProbes.c:107:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,0.75,0.65,0.69,0.78
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                 {                  }
DesignProbes.c:108:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,0.76,0.65,0.69,0.78
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                 {                  }
DesignProbes.c:109:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,0,0,0,0
                 ^˜˜˜˜˜˜
                 {      }
DesignProbes.c:105:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,0.75,0.65,0.69,0.78
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
DesignProbes.c:85:3: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                0,0,0,0
                ^˜˜˜˜˜˜
DesignProbes.c:110:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,0,0,0,0
                 ^˜˜˜˜˜˜
                 {      }
DesignProbes.c:111:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,1.295827995,0.84547091,0.91019099,1.256013166
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                 {                                            }
DesignProbes.c:112:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,0.755889609,0.241428373,0.396379912,0.676545316
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                 {                                              }
DesignProbes.c:113:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,0.99945386,0.740323132,0.435659206,0.864287715
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                 {                                             }
DesignProbes.c:114:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,0.65,0.55,0.48,0.69
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                 {                  }
DesignProbes.c:110:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,0,0,0,0
                 ^˜˜˜˜˜˜
DesignProbes.c:115:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,0.843147406,0.101248351,0.49063599,0.50754303
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                 {                                            }
DesignProbes.c:116:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,0,0,0,0
                 ^˜˜˜˜˜˜
                 {      }
DesignProbes.c:117:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,1.0651638,0.249934344,0.699352949,0.716721488
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                 {                                            }
DesignProbes.c:118:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,0.871921533,0.59458138,0.396379912,1.075877275
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                 {                                             }
DesignProbes.c:119:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,0.65,0.56,0.49,0.69
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                 {                  }
DesignProbes.c:115:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,0.843147406,0.101248351,0.49063599,0.50754303
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
DesignProbes.c:120:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,1.07531714,0.318907854,0.653287717,0.967868114
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                 {                                             }
DesignProbes.c:121:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,1.099899195,0.730184613,0.661798984,1.336192565
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                 {                                              }
DesignProbes.c:122:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,0,0,0,0
                 ^˜˜˜˜˜˜
                 {      }
DesignProbes.c:123:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,1.45897431,1.318532145,0.91019099,1.491691514
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                 {                                            }
DesignProbes.c:124:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,0.65,0.56,0.49,0.69
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                 {                  }
DesignProbes.c:120:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,1.07531714,0.318907854,0.653287717,0.967868114
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
DesignProbes.c:125:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,1.242135174,0.894838095,1.108555445,1.20450984
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                 {                                             }
DesignProbes.c:126:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,0.911428974,0.524430101,0.653287717,1.087821916
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                 {                                              }
DesignProbes.c:127:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,0.503209827,0.274849491,0.49063599,0.730763505
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                 {                                             }
DesignProbes.c:128:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,0,0,0,0
                 ^˜˜˜˜˜˜
                 {      }
DesignProbes.c:129:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,0.65,0.55,0.48,0.69
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                 {                  }
DesignProbes.c:125:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,1.242135174,0.894838095,1.108555445,1.20450984
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
DesignProbes.c:130:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,0.65,0.55,0.48,0.69
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                 {                  }
DesignProbes.c:131:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,0.65,0.56,0.49,0.69
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                 {                  }
DesignProbes.c:132:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,0.65,0.56,0.49,0.69
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                 {                  }
DesignProbes.c:133:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,0.65,0.55,0.48,0.69
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                 {                  }
DesignProbes.c:134:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,0,0,0,0
                 ^˜˜˜˜˜˜
                 {      }
DesignProbes.c:130:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,0.65,0.55,0.48,0.69
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
DesignProbes.c:110:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,0,0,0,0
                 ^˜˜˜˜˜˜
DesignProbes.c:135:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,0,0,0,0
                 ^˜˜˜˜˜˜
                 {      }
DesignProbes.c:136:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,1.100661785,0.969784756,1.318532145,1.385046493
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                 {                                              }
DesignProbes.c:137:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,0.565895968,-0.060347902,0.59458138,0.653168672
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                 {                                              }
DesignProbes.c:138:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,0.782168488,0.788161238,0.740323132,1.001540513
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                 {                                              }
DesignProbes.c:139:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,0.68,0.46,0.55,0.65
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                 {                  }
DesignProbes.c:135:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,0,0,0,0
                 ^˜˜˜˜˜˜
DesignProbes.c:140:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,0.468913405,-0.469855984,0.274849491,-0.024857805
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                 {                                                }
DesignProbes.c:141:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,0,0,0,0
                 ^˜˜˜˜˜˜
                 {      }
DesignProbes.c:142:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,0.258195131,-0.70438632,0.249934344,-0.143236405
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                 {                                               }
DesignProbes.c:143:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,0.502914193,-0.060347902,0.241428373,0.582415494
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                 {                                               }
DesignProbes.c:144:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,0.68,0.47,0.56,0.65
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                 {                  }
DesignProbes.c:140:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,0.468913405,-0.469855984,0.274849491,-0.024857805
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
DesignProbes.c:145:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,0.584083861,0.258975454,0.524430101,0.846496194
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                 {                                              }
DesignProbes.c:146:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,0.968040559,0.797499702,0.730184613,1.270687029
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                 {                                              }
DesignProbes.c:147:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,0,0,0,0
                 ^˜˜˜˜˜˜
                 {      }
DesignProbes.c:148:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,1.081040749,0.969784756,0.84547091,1.254355018
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                 {                                             }
DesignProbes.c:149:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,0.68,0.47,0.56,0.65
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                 {                  }
DesignProbes.c:145:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,0.584083861,0.258975454,0.524430101,0.846496194
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
DesignProbes.c:150:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,1.048553951,0.728354541,0.894838095,0.882097231
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                 {                                              }
DesignProbes.c:151:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,0.88611252,0.258975454,0.318907854,0.746214538
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                 {                                             }
DesignProbes.c:152:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,0.239520858,-0.469855984,0.101248351,0.18553379
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                 {                                              }
DesignProbes.c:153:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,0,0,0,0
                 ^˜˜˜˜˜˜
                 {      }
DesignProbes.c:154:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,0.68,0.46,0.55,0.65
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                 {                  }
DesignProbes.c:150:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,1.048553951,0.728354541,0.894838095,0.882097231
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
DesignProbes.c:155:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,0.68,0.46,0.55,0.65
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                 {                  }
DesignProbes.c:156:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,0.68,0.47,0.56,0.65
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                 {                  }
DesignProbes.c:157:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,0.68,0.47,0.56,0.65
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                 {                  }
DesignProbes.c:158:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,0.68,0.46,0.55,0.65
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                 {                  }
DesignProbes.c:159:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,0,0,0,0
                 ^˜˜˜˜˜˜
                 {      }
DesignProbes.c:155:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,0.68,0.46,0.55,0.65
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
DesignProbes.c:135:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,0,0,0,0
                 ^˜˜˜˜˜˜
DesignProbes.c:160:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,0,0,0,0
                 ^˜˜˜˜˜˜
                 {      }
DesignProbes.c:161:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,1.566899704,1.081040749,1.45897431,1.443665704
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                 {                                             }
DesignProbes.c:162:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,0.976725675,0.502914193,0.871921533,0.851622883
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                 {                                              }
DesignProbes.c:163:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,1.482046826,0.782168488,0.99945386,1.203555051
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                 {                                             }
DesignProbes.c:164:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,0.85,0.68,0.65,0.76
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                 {                  }
DesignProbes.c:160:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,0,0,0,0
                 ^˜˜˜˜˜˜
DesignProbes.c:165:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,0.798628781,0.239520858,0.503209827,0.766581547
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                 {                                              }
DesignProbes.c:166:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,0,0,0,0
                 ^˜˜˜˜˜˜
                 {      }
DesignProbes.c:167:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,1.141098246,0.258195131,1.0651638,0.856582783
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                 {                                            }
DesignProbes.c:168:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,0.976725675,0.565895968,0.755889609,1.150635633
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                 {                                              }
DesignProbes.c:169:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,0.85,0.68,0.65,0.75
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                 {                  }
DesignProbes.c:165:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,0.798628781,0.239520858,0.503209827,0.766581547
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
DesignProbes.c:170:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,1.125403302,0.88611252,0.911428974,1.496720812
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                 {                                             }
DesignProbes.c:171:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,1.68169282,0.968040559,1.099899195,1.822113278
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                 {                                             }
DesignProbes.c:172:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,0,0,0,0
                 ^˜˜˜˜˜˜
                 {      }
DesignProbes.c:173:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,1.566899704,1.100661785,1.295827995,1.545032445
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                 {                                              }
DesignProbes.c:174:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,0.85,0.68,0.65,0.75
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                 {                  }
DesignProbes.c:170:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,1.125403302,0.88611252,0.911428974,1.496720812
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
DesignProbes.c:175:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,1.35948517,1.048553951,1.242135174,1.478009492
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                 {                                             }
DesignProbes.c:176:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,1.125403302,0.584083861,1.07531714,1.231861002
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                 {                                             }
DesignProbes.c:177:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,0.798628781,0.468913405,0.843147406,0.630005348
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                 {                                              }
DesignProbes.c:178:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,0,0,0,0
                 ^˜˜˜˜˜˜
                 {      }
DesignProbes.c:179:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,0.85,0.68,0.65,0.75
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                 {                  }
DesignProbes.c:175:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,1.35948517,1.048553951,1.242135174,1.478009492
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
DesignProbes.c:180:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,0.85,0.68,0.65,0.75
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                 {                  }
DesignProbes.c:181:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,0.85,0.68,0.65,0.75
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                 {                  }
DesignProbes.c:182:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,0.85,0.68,0.65,0.75
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                 {                  }
DesignProbes.c:183:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,0.85,0.68,0.65,0.75
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                 {                  }
DesignProbes.c:184:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,0,0,0,0        
                 ^˜˜˜˜˜˜
                 {      }
DesignProbes.c:180:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,0.85,0.68,0.65,0.75
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
DesignProbes.c:160:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,0,0,0,0
                 ^˜˜˜˜˜˜
132 warnings generated.
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Biostrings/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/S4Vectors/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/IRanges/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/XVector/include" -I/usr/local/include  -fopenmp -fPIC  -Wall -g -O2  -c Diff.c -o Diff.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Biostrings/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/S4Vectors/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/IRanges/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/XVector/include" -I/usr/local/include  -fopenmp -fPIC  -Wall -g -O2  -c DistanceMatrix.c -o DistanceMatrix.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Biostrings/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/S4Vectors/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/IRanges/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/XVector/include" -I/usr/local/include  -fopenmp -fPIC  -Wall -g -O2  -c EnumerateSequence.c -o EnumerateSequence.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Biostrings/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/S4Vectors/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/IRanges/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/XVector/include" -I/usr/local/include  -fopenmp -fPIC  -Wall -g -O2  -c ExpandAmbiguities.c -o ExpandAmbiguities.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Biostrings/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/S4Vectors/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/IRanges/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/XVector/include" -I/usr/local/include  -fopenmp -fPIC  -Wall -g -O2  -c FindFrameshifts.c -o FindFrameshifts.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Biostrings/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/S4Vectors/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/IRanges/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/XVector/include" -I/usr/local/include  -fopenmp -fPIC  -Wall -g -O2  -c GetPools.c -o GetPools.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Biostrings/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/S4Vectors/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/IRanges/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/XVector/include" -I/usr/local/include  -fopenmp -fPIC  -Wall -g -O2  -c Import.c -o Import.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Biostrings/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/S4Vectors/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/IRanges/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/XVector/include" -I/usr/local/include  -fopenmp -fPIC  -Wall -g -O2  -c InformationContent.c -o InformationContent.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Biostrings/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/S4Vectors/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/IRanges/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/XVector/include" -I/usr/local/include  -fopenmp -fPIC  -Wall -g -O2  -c InsertGaps.c -o InsertGaps.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Biostrings/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/S4Vectors/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/IRanges/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/XVector/include" -I/usr/local/include  -fopenmp -fPIC  -Wall -g -O2  -c IntDist.c -o IntDist.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Biostrings/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/S4Vectors/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/IRanges/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/XVector/include" -I/usr/local/include  -fopenmp -fPIC  -Wall -g -O2  -c MeltPolymer.c -o MeltPolymer.o
MeltPolymer.c:80:3: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                -7.9,-8.4,-7.8,-7.2
                ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                {                  }
MeltPolymer.c:81:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,-8.5,-8.0,-10.6,-7.8
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                 {                   }
MeltPolymer.c:82:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,-8.2,-9.8,-8.0,-8.4
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                 {                  }
MeltPolymer.c:83:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,-7.2,-8.2,-8.5,-7.9
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                 {                  }
MeltPolymer.c:89:3: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                -22.2,-22.4,-21.0,-20.4
                ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                {                      }
MeltPolymer.c:90:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,-22.7,-19.9,-27.2,-21.0
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                 {                      }
MeltPolymer.c:91:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,-22.2,-24.4,-19.9,-22.4
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                 {                      }
MeltPolymer.c:92:4: warning: suggest braces around initialization of subobject [-Wmissing-braces]
                ,-21.3,-22.2,-22.7,-22.2
                 ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
                 {                      }
8 warnings generated.
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Biostrings/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/S4Vectors/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/IRanges/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/XVector/include" -I/usr/local/include  -fopenmp -fPIC  -Wall -g -O2  -c MovingAverage.c -o MovingAverage.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Biostrings/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/S4Vectors/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/IRanges/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/XVector/include" -I/usr/local/include  -fopenmp -fPIC  -Wall -g -O2  -c MultiMatch.c -o MultiMatch.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Biostrings/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/S4Vectors/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/IRanges/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/XVector/include" -I/usr/local/include  -fopenmp -fPIC  -Wall -g -O2  -c NNLS.c -o NNLS.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Biostrings/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/S4Vectors/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/IRanges/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/XVector/include" -I/usr/local/include  -fopenmp -fPIC  -Wall -g -O2  -c Order.c -o Order.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Biostrings/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/S4Vectors/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/IRanges/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/XVector/include" -I/usr/local/include  -fopenmp -fPIC  -Wall -g -O2  -c PredictDBN.c -o PredictDBN.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Biostrings/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/S4Vectors/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/IRanges/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/XVector/include" -I/usr/local/include  -fopenmp -fPIC  -Wall -g -O2  -c PredictHEC.c -o PredictHEC.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Biostrings/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/S4Vectors/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/IRanges/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/XVector/include" -I/usr/local/include  -fopenmp -fPIC  -Wall -g -O2  -c R_init_decipher.c -o R_init_decipher.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Biostrings/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/S4Vectors/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/IRanges/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/XVector/include" -I/usr/local/include  -fopenmp -fPIC  -Wall -g -O2  -c RemoveGaps.c -o RemoveGaps.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Biostrings/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/S4Vectors/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/IRanges/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/XVector/include" -I/usr/local/include  -fopenmp -fPIC  -Wall -g -O2  -c ReplaceChars.c -o ReplaceChars.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Biostrings/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/S4Vectors/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/IRanges/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/XVector/include" -I/usr/local/include  -fopenmp -fPIC  -Wall -g -O2  -c S4Vectors_stubs.c -o S4Vectors_stubs.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Biostrings/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/S4Vectors/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/IRanges/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/XVector/include" -I/usr/local/include  -fopenmp -fPIC  -Wall -g -O2  -c TerminalMismatch.c -o TerminalMismatch.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Biostrings/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/S4Vectors/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/IRanges/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/XVector/include" -I/usr/local/include  -fopenmp -fPIC  -Wall -g -O2  -c Translate.c -o Translate.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Biostrings/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/S4Vectors/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/IRanges/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/XVector/include" -I/usr/local/include  -fopenmp -fPIC  -Wall -g -O2  -c VectorSums.c -o VectorSums.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Biostrings/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/S4Vectors/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/IRanges/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/XVector/include" -I/usr/local/include  -fopenmp -fPIC  -Wall -g -O2  -c XVector_stubs.c -o XVector_stubs.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o DECIPHER.so AlignProfiles.o AssignIndels.o Biostrings_stubs.o CalculateDeltaG.o CalculateFISH.o ChainSegments.o Cluster.o ClusterML.o CommonGaps.o Compositions.o Compression.o ConsensusSequence.o ConsolidateGaps.o DesignProbes.o Diff.o DistanceMatrix.o EnumerateSequence.o ExpandAmbiguities.o FindFrameshifts.o GetPools.o Import.o InformationContent.o InsertGaps.o IntDist.o MeltPolymer.o MovingAverage.o MultiMatch.o NNLS.o Order.o PredictDBN.o PredictHEC.o R_init_decipher.o RemoveGaps.o ReplaceChars.o S4Vectors_stubs.o TerminalMismatch.o Translate.o VectorSums.o XVector_stubs.o -fopenmp -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/3.5/Resources/library/DECIPHER/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (DECIPHER)

name	user	system	elapsed
AA_REDUCED	0.068	0.011	0.079
Add2DB	0.367	0.023	0.396
AdjustAlignment	0.315	0.027	0.347
AlignDB	1.435	0.031	1.482
AlignProfiles	1.225	0.040	1.285
AlignSeqs	34.751	0.198	35.274
AlignSynteny	3.868	0.036	3.949
AlignTranslation	11.487	0.123	11.721
AmplifyDNA	0.006	0.003	0.008
Array2Matrix	7.519	0.042	7.630
BrowseDB	0.034	0.001	0.035
BrowseSeqs	28.220	0.253	28.652
CalculateEfficiencyArray	0.018	0.004	0.022
CalculateEfficiencyFISH	0.009	0.000	0.009
CalculateEfficiencyPCR	0.006	0.000	0.007
Codec	0.994	0.004	1.007
ConsensusSequence	0.238	0.004	0.242
CorrectFrameshifts	28.283	0.134	28.550
CreateChimeras	1.022	0.004	1.028
DB2Seqs	0.025	0.009	0.036
DesignArray	7.191	0.049	7.277
DesignPrimers	0.002	0.001	0.002
DesignProbes	0.002	0.000	0.003
DesignSignatures	0.006	0.001	0.007
DigestDNA	0.142	0.004	0.145
Disambiguate	0.046	0.001	0.046
DistanceMatrix	0.055	0.002	0.057
FindChimeras	0.090	0.002	0.093
FindSynteny	2.041	0.005	2.055
FormGroups	0.097	0.002	0.100
HEC_MI	0.259	0.017	0.281
IdClusters	2.439	0.017	2.471
IdConsensus	1.080	0.021	1.105
IdLengths	0.025	0.001	0.026
IdTaxa	12.807	0.409	13.288
IdentifyByRank	0.057	0.001	0.058
LearnTaxa	3.704	0.788	4.511
MIQS	0.034	0.006	0.040
MODELS	0.001	0.000	0.001
MaskAlignment	0.992	0.057	1.055
MeltDNA	0.057	0.002	0.060
NNLS	0.006	0.001	0.006
OrientNucleotides	1.305	0.013	1.324
PFASUM	0.008	0.003	0.010
PredictDBN	29.054	0.161	29.395
PredictHEC	0.321	0.012	0.335
RESTRICTION_ENZYMES	0.006	0.003	0.009
ReadDendrogram	0.025	0.002	0.027
RemoveGaps	0.012	0.001	0.012
SearchDB	0.052	0.003	0.055
Seqs2DB	0.128	0.001	0.132
StaggerAlignment	21.984	0.106	22.233
Synteny-class	3.051	0.019	3.114
Taxa-class	3.314	0.053	3.414
TerminalChar	0.017	0.001	0.018
TileSeqs	6.768	0.017	6.847
TrainingSet_16S	3.489	0.072	3.599
TrimDNA	0.040	0.000	0.041
WriteDendrogram	0.012	0.000	0.013
deltaGrules	0.016	0.008	0.026
deltaHrules	0.030	0.011	0.043
deltaSrules	0.093	0.006	0.100