This page was generated on 2018-10-17 08:37:36 -0400 (Wed, 17 Oct 2018).
ChemmineOB 1.18.0 Thomas Girke
Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018) |
URL: https://git.bioconductor.org/packages/ChemmineOB |
Branch: RELEASE_3_7 |
Last Commit: 46cd459 |
Last Changed Date: 2018-04-30 10:35:31 -0400 (Mon, 30 Apr 2018) |
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | |
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | |
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | |
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###
### Running command:
###
### C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:ChemmineOB.install-out.txt --library=C:\Users\biocbuild\bbs-3.7-bioc\R\library --no-vignettes --timings ChemmineOB_1.18.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.7-bioc/meat/ChemmineOB.Rcheck'
* using R version 3.5.1 Patched (2018-07-24 r75005)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'ChemmineOB/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'ChemmineOB' version '1.18.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'ChemmineOB' can be installed ... OK
* checking installed package size ... NOTE
installed size is 17.1Mb
sub-directories of 1Mb or more:
R 2.3Mb
libs 12.6Mb
openbabel_data 2.0Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Package listed in more than one of Depends, Imports, Suggests, Enhances:
'ChemmineR'
A package should be listed in only one of these fields.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Namespaces in Imports field not imported from:
'BiocGenerics' 'Rcpp'
All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
copyToC: no visible global function definition for 'RSWIG_createNewRef'
copyToC,OpenBabel::CharPtrLess: no visible global function definition
for 'RSWIG_createNewRef'
copyToC,OpenBabel::DoubleType: no visible global function definition
for 'RSWIG_createNewRef'
copyToC,OpenBabel::FptIndexHeader: no visible global function
definition for 'RSWIG_createNewRef'
copyToC,OpenBabel::LineSearchType: no visible global function
definition for 'RSWIG_createNewRef'
copyToC,std::pair<(unsigned int,unsigned int)>: no visible global
function definition for 'RSWIG_createNewRef'
copyToC,stringp: no visible global function definition for
'RSWIG_createNewRef'
delete,_p_OpenBabel__AliasData: no visible global function definition
for 'delete_OpenBabel__AliasData'
delete,_p_OpenBabel__CharPtrLess: no visible global function definition
for 'delete_OpenBabel__CharPtrLess'
delete,_p_OpenBabel__DoubleType: no visible global function definition
for 'delete_OpenBabel__DoubleType'
delete,_p_OpenBabel__FastSearch: no visible global function definition
for 'delete_OpenBabel__FastSearch'
delete,_p_OpenBabel__FastSearchIndexer: no visible global function
definition for 'delete_OpenBabel__FastSearchIndexer'
delete,_p_OpenBabel__FptIndexHeader: no visible global function
definition for 'delete_OpenBabel__FptIndexHeader'
delete,_p_OpenBabel__LineSearchType: no visible global function
definition for 'delete_OpenBabel__LineSearchType'
delete,_p_OpenBabel__OBAngle: no visible global function definition for
'delete_OpenBabel__OBAngle'
delete,_p_OpenBabel__OBAngleData: no visible global function definition
for 'delete_OpenBabel__OBAngleData'
delete,_p_OpenBabel__OBAromaticTyper: no visible global function
definition for 'delete_OpenBabel__OBAromaticTyper'
delete,_p_OpenBabel__OBAtom: no visible global function definition for
'delete_OpenBabel__OBAtom'
delete,_p_OpenBabel__OBAtomAtomIter: no visible global function
definition for 'delete_OpenBabel__OBAtomAtomIter'
delete,_p_OpenBabel__OBAtomBondIter: no visible global function
definition for 'delete_OpenBabel__OBAtomBondIter'
delete,_p_OpenBabel__OBAtomClassData: no visible global function
definition for 'delete_OpenBabel__OBAtomClassData'
delete,_p_OpenBabel__OBAtomTyper: no visible global function definition
for 'delete_OpenBabel__OBAtomTyper'
delete,_p_OpenBabel__OBBase: no visible global function definition for
'delete_OpenBabel__OBBase'
delete,_p_OpenBabel__OBBitVec: no visible global function definition
for 'delete_OpenBabel__OBBitVec'
delete,_p_OpenBabel__OBBond: no visible global function definition for
'delete_OpenBabel__OBBond'
delete,_p_OpenBabel__OBBuilder: no visible global function definition
for 'delete_OpenBabel__OBBuilder'
delete,_p_OpenBabel__OBChainsParser: no visible global function
definition for 'delete_OpenBabel__OBChainsParser'
delete,_p_OpenBabel__OBChiralData: no visible global function
definition for 'delete_OpenBabel__OBChiralData'
delete,_p_OpenBabel__OBCommentData: no visible global function
definition for 'delete_OpenBabel__OBCommentData'
delete,_p_OpenBabel__OBConformerData: no visible global function
definition for 'delete_OpenBabel__OBConformerData'
delete,_p_OpenBabel__OBConversion: no visible global function
definition for 'delete_OpenBabel__OBConversion'
delete,_p_OpenBabel__OBDOSData: no visible global function definition
for 'delete_OpenBabel__OBDOSData'
delete,_p_OpenBabel__OBDescriptor: no visible global function
definition for 'delete_OpenBabel__OBDescriptor'
delete,_p_OpenBabel__OBElectronicTransitionData: no visible global
function definition for
'delete_OpenBabel__OBElectronicTransitionData'
delete,_p_OpenBabel__OBElement: no visible global function definition
for 'delete_OpenBabel__OBElement'
delete,_p_OpenBabel__OBElementTable: no visible global function
definition for 'delete_OpenBabel__OBElementTable'
delete,_p_OpenBabel__OBError: no visible global function definition for
'delete_OpenBabel__OBError'
delete,_p_OpenBabel__OBExternalBond: no visible global function
definition for 'delete_OpenBabel__OBExternalBond'
delete,_p_OpenBabel__OBExternalBondData: no visible global function
definition for 'delete_OpenBabel__OBExternalBondData'
delete,_p_OpenBabel__OBFFCalculation2: no visible global function
definition for 'delete_OpenBabel__OBFFCalculation2'
delete,_p_OpenBabel__OBFFCalculation3: no visible global function
definition for 'delete_OpenBabel__OBFFCalculation3'
delete,_p_OpenBabel__OBFFCalculation4: no visible global function
definition for 'delete_OpenBabel__OBFFCalculation4'
delete,_p_OpenBabel__OBFFConstraint: no visible global function
definition for 'delete_OpenBabel__OBFFConstraint'
delete,_p_OpenBabel__OBFFConstraints: no visible global function
definition for 'delete_OpenBabel__OBFFConstraints'
delete,_p_OpenBabel__OBFFParameter: no visible global function
definition for 'delete_OpenBabel__OBFFParameter'
delete,_p_OpenBabel__OBFingerprint: no visible global function
definition for 'delete_OpenBabel__OBFingerprint'
delete,_p_OpenBabel__OBForceField: no visible global function
definition for 'delete_OpenBabel__OBForceField'
delete,_p_OpenBabel__OBFormat: no visible global function definition
for 'delete_OpenBabel__OBFormat'
delete,_p_OpenBabel__OBGenericData: no visible global function
definition for 'delete_OpenBabel__OBGenericData'
delete,_p_OpenBabel__OBGlobalDataBase: no visible global function
definition for 'delete_OpenBabel__OBGlobalDataBase'
delete,_p_OpenBabel__OBGridData: no visible global function definition
for 'delete_OpenBabel__OBGridData'
delete,_p_OpenBabel__OBInternalCoord: no visible global function
definition for 'delete_OpenBabel__OBInternalCoord'
delete,_p_OpenBabel__OBIsotopeTable: no visible global function
definition for 'delete_OpenBabel__OBIsotopeTable'
delete,_p_OpenBabel__OBMatrixData: no visible global function
definition for 'delete_OpenBabel__OBMatrixData'
delete,_p_OpenBabel__OBMessageHandler: no visible global function
definition for 'delete_OpenBabel__OBMessageHandler'
delete,_p_OpenBabel__OBMol: no visible global function definition for
'delete_OpenBabel__OBMol'
delete,_p_OpenBabel__OBMolAngleIter: no visible global function
definition for 'delete_OpenBabel__OBMolAngleIter'
delete,_p_OpenBabel__OBMolAtomBFSIter: no visible global function
definition for 'delete_OpenBabel__OBMolAtomBFSIter'
delete,_p_OpenBabel__OBMolAtomDFSIter: no visible global function
definition for 'delete_OpenBabel__OBMolAtomDFSIter'
delete,_p_OpenBabel__OBMolAtomIter: no visible global function
definition for 'delete_OpenBabel__OBMolAtomIter'
delete,_p_OpenBabel__OBMolBondBFSIter: no visible global function
definition for 'delete_OpenBabel__OBMolBondBFSIter'
delete,_p_OpenBabel__OBMolBondIter: no visible global function
definition for 'delete_OpenBabel__OBMolBondIter'
delete,_p_OpenBabel__OBMolPairIter: no visible global function
definition for 'delete_OpenBabel__OBMolPairIter'
delete,_p_OpenBabel__OBMolRingIter: no visible global function
definition for 'delete_OpenBabel__OBMolRingIter'
delete,_p_OpenBabel__OBMolTorsionIter: no visible global function
definition for 'delete_OpenBabel__OBMolTorsionIter'
delete,_p_OpenBabel__OBOp: no visible global function definition for
'delete_OpenBabel__OBOp'
delete,_p_OpenBabel__OBOrbital: no visible global function definition
for 'delete_OpenBabel__OBOrbital'
delete,_p_OpenBabel__OBOrbitalData: no visible global function
definition for 'delete_OpenBabel__OBOrbitalData'
delete,_p_OpenBabel__OBPairData: no visible global function definition
for 'delete_OpenBabel__OBPairData'
delete,_p_OpenBabel__OBPlugin: no visible global function definition
for 'delete_OpenBabel__OBPlugin'
delete,_p_OpenBabel__OBRTree: no visible global function definition for
'delete_OpenBabel__OBRTree'
delete,_p_OpenBabel__OBRandom: no visible global function definition
for 'delete_OpenBabel__OBRandom'
delete,_p_OpenBabel__OBResidue: no visible global function definition
for 'delete_OpenBabel__OBResidue'
delete,_p_OpenBabel__OBResidueAtomIter: no visible global function
definition for 'delete_OpenBabel__OBResidueAtomIter'
delete,_p_OpenBabel__OBResidueData: no visible global function
definition for 'delete_OpenBabel__OBResidueData'
delete,_p_OpenBabel__OBResidueIter: no visible global function
definition for 'delete_OpenBabel__OBResidueIter'
delete,_p_OpenBabel__OBRing: no visible global function definition for
'delete_OpenBabel__OBRing'
delete,_p_OpenBabel__OBRingData: no visible global function definition
for 'delete_OpenBabel__OBRingData'
delete,_p_OpenBabel__OBRingSearch: no visible global function
definition for 'delete_OpenBabel__OBRingSearch'
delete,_p_OpenBabel__OBRingTyper: no visible global function definition
for 'delete_OpenBabel__OBRingTyper'
delete,_p_OpenBabel__OBRotationData: no visible global function
definition for 'delete_OpenBabel__OBRotationData'
delete,_p_OpenBabel__OBSSMatch: no visible global function definition
for 'delete_OpenBabel__OBSSMatch'
delete,_p_OpenBabel__OBSerialNums: no visible global function
definition for 'delete_OpenBabel__OBSerialNums'
delete,_p_OpenBabel__OBSetData: no visible global function definition
for 'delete_OpenBabel__OBSetData'
delete,_p_OpenBabel__OBSmartsMatcher: no visible global function
definition for 'delete_OpenBabel__OBSmartsMatcher'
delete,_p_OpenBabel__OBSmartsPattern: no visible global function
definition for 'delete_OpenBabel__OBSmartsPattern'
delete,_p_OpenBabel__OBSqrtTbl: no visible global function definition
for 'delete_OpenBabel__OBSqrtTbl'
delete,_p_OpenBabel__OBStopwatch: no visible global function definition
for 'delete_OpenBabel__OBStopwatch'
delete,_p_OpenBabel__OBSymmetryData: no visible global function
definition for 'delete_OpenBabel__OBSymmetryData'
delete,_p_OpenBabel__OBTorsion: no visible global function definition
for 'delete_OpenBabel__OBTorsion'
delete,_p_OpenBabel__OBTorsionData: no visible global function
definition for 'delete_OpenBabel__OBTorsionData'
delete,_p_OpenBabel__OBTypeTable: no visible global function definition
for 'delete_OpenBabel__OBTypeTable'
delete,_p_OpenBabel__OBUnitCell: no visible global function definition
for 'delete_OpenBabel__OBUnitCell'
delete,_p_OpenBabel__OBVectorData: no visible global function
definition for 'delete_OpenBabel__OBVectorData'
delete,_p_OpenBabel__OBVibrationData: no visible global function
definition for 'delete_OpenBabel__OBVibrationData'
delete,_p_OpenBabel__OBVirtualBond: no visible global function
definition for 'delete_OpenBabel__OBVirtualBond'
delete,_p_OpenBabel__SpaceGroup: no visible global function definition
for 'delete_OpenBabel__SpaceGroup'
delete,_p_OpenBabel__matrix3x3: no visible global function definition
for 'delete_OpenBabel__matrix3x3'
delete,_p_OpenBabel__obLogBuf: no visible global function definition
for 'delete_OpenBabel__obLogBuf'
delete,_p_OpenBabel__transform3d: no visible global function definition
for 'delete_OpenBabel__transform3d'
delete,_p_OpenBabel__vector3: no visible global function definition for
'delete_OpenBabel__vector3'
delete,_p_std__binary_functionT_char_const_p_char_const_p_bool_t: no
visible global function definition for
'delete_std__binary_functionT_char_const_p_char_const_p_bool_t'
delete,_p_std__pairT_unsigned_int_unsigned_int_t: no visible global
function definition for
'delete_std__pairT_unsigned_int_unsigned_int_t'
delete,_p_std__stringbuf: no visible global function definition for
'delete_std__stringbuf'
delete,_p_std__vectorT_OpenBabel__OBBond_std__allocatorT_OpenBabel__OBBond_t_t:
no visible global function definition for
'delete_std__vectorT_OpenBabel__OBBond_std__allocatorT_OpenBabel__OBBond_t_t'
delete,_p_std__vectorT_OpenBabel__OBGenericData_p_std__allocatorT_OpenBabel__OBGenericData_p_t_t:
no visible global function definition for
'delete_std__vectorT_OpenBabel__OBGenericData_p_std__allocatorT_OpenBabel__OBGenericData_p_t_t'
delete,_p_std__vectorT_OpenBabel__OBInternalCoord_p_std__allocatorT_OpenBabel__OBInternalCoord_p_t_t:
no visible global function definition for
'delete_std__vectorT_OpenBabel__OBInternalCoord_p_std__allocatorT_OpenBabel__OBInternalCoord_p_t_t'
delete,_p_std__vectorT_OpenBabel__OBMol_std__allocatorT_OpenBabel__OBMol_t_t:
no visible global function definition for
'delete_std__vectorT_OpenBabel__OBMol_std__allocatorT_OpenBabel__OBMol_t_t'
delete,_p_std__vectorT_OpenBabel__OBResidue_std__allocatorT_OpenBabel__OBResidue_t_t:
no visible global function definition for
'delete_std__vectorT_OpenBabel__OBResidue_std__allocatorT_OpenBabel__OBResidue_t_t'
delete,_p_std__vectorT_OpenBabel__OBRing_p_std__allocatorT_OpenBabel__OBRing_p_t_t:
no visible global function definition for
'delete_std__vectorT_OpenBabel__OBRing_p_std__allocatorT_OpenBabel__OBRing_p_t_t'
delete,_p_std__vectorT_OpenBabel__OBRing_std__allocatorT_OpenBabel__OBRing_t_t:
no visible global function definition for
'delete_std__vectorT_OpenBabel__OBRing_std__allocatorT_OpenBabel__OBRing_t_t'
delete,_p_std__vectorT_OpenBabel__vector3_std__allocatorT_OpenBabel__vector3_t_t:
no visible global function definition for
'delete_std__vectorT_OpenBabel__vector3_std__allocatorT_OpenBabel__vector3_t_t'
delete,_p_std__vectorT_double_std__allocatorT_double_t_t: no visible
global function definition for
'delete_std__vectorT_double_std__allocatorT_double_t_t'
delete,_p_std__vectorT_int_std__allocatorT_int_t_t: no visible global
function definition for
'delete_std__vectorT_int_std__allocatorT_int_t_t'
delete,_p_std__vectorT_std__pairT_unsigned_int_unsigned_int_t_std__allocatorT_std__pairT_unsigned_int_unsigned_int_t_t_t:
no visible global function definition for
'delete_std__vectorT_std__pairT_unsigned_int_unsigned_int_t_std__allocatorT_std__pairT_unsigned_int_unsigned_int_t_t_t'
delete,_p_std__vectorT_std__string_std__allocatorT_std__string_t_t: no
visible global function definition for
'delete_std__vectorT_std__string_std__allocatorT_std__string_t_t'
delete,_p_std__vectorT_std__vectorT_OpenBabel__vector3_std__allocatorT_OpenBabel__vector3_t_t_std__allocatorT_std__vectorT_OpenBabel__vector3_std__allocatorT_OpenBabel__vector3_t_t_t_t:
no visible global function definition for
'delete_std__vectorT_std__vectorT_OpenBabel__vector3_std__allocatorT_OpenBabel__vector3_t_t_std__allocatorT_std__vectorT_OpenBabel__vector3_std__allocatorT_OpenBabel__vector3_t_t_t_t'
delete,_p_std__vectorT_std__vectorT_int_std__allocatorT_int_t_t_std__allocatorT_std__vectorT_int_std__allocatorT_int_t_t_t_t:
no visible global function definition for
'delete_std__vectorT_std__vectorT_int_std__allocatorT_int_t_t_std__allocatorT_std__vectorT_int_std__allocatorT_int_t_t_t_t'
delete,_p_std__vectorT_std__vectorT_std__pairT_unsigned_int_unsigned_int_t_std__allocatorT_std__pairT_unsigned_int_unsigned_int_t_t_t_std__allocatorT_std__vectorT_std__pairT_unsigned_int_unsigned_int_t_std__allocatorT_std__pairT_unsigned_int_unsigned_int_t_t_t_t_t:
no visible global function definition for
'delete_std__vectorT_std__vectorT_std__pairT_unsigned_int_unsigned_int_t_std__allocatorT_std__pairT_unsigned_int_unsigned_int_t_t_t_std__allocatorT_std__vectorT_std__pairT_unsigned_int_unsigned_int_t_std__allocatorT_std__pairT_unsigned_int_unsigned_int_t_t_t_t_t'
delete,_p_std__vectorT_unsigned_int_std__allocatorT_unsigned_int_t_t:
no visible global function definition for
'delete_std__vectorT_unsigned_int_std__allocatorT_unsigned_int_t_t'
Undefined global functions or variables:
RSWIG_createNewRef delete_OpenBabel__AliasData
delete_OpenBabel__CharPtrLess delete_OpenBabel__DoubleType
delete_OpenBabel__FastSearch delete_OpenBabel__FastSearchIndexer
delete_OpenBabel__FptIndexHeader delete_OpenBabel__LineSearchType
delete_OpenBabel__OBAngle delete_OpenBabel__OBAngleData
delete_OpenBabel__OBAromaticTyper delete_OpenBabel__OBAtom
delete_OpenBabel__OBAtomAtomIter delete_OpenBabel__OBAtomBondIter
delete_OpenBabel__OBAtomClassData delete_OpenBabel__OBAtomTyper
delete_OpenBabel__OBBase delete_OpenBabel__OBBitVec
delete_OpenBabel__OBBond delete_OpenBabel__OBBuilder
delete_OpenBabel__OBChainsParser delete_OpenBabel__OBChiralData
delete_OpenBabel__OBCommentData delete_OpenBabel__OBConformerData
delete_OpenBabel__OBConversion delete_OpenBabel__OBDOSData
delete_OpenBabel__OBDescriptor
delete_OpenBabel__OBElectronicTransitionData
delete_OpenBabel__OBElement delete_OpenBabel__OBElementTable
delete_OpenBabel__OBError delete_OpenBabel__OBExternalBond
delete_OpenBabel__OBExternalBondData
delete_OpenBabel__OBFFCalculation2 delete_OpenBabel__OBFFCalculation3
delete_OpenBabel__OBFFCalculation4 delete_OpenBabel__OBFFConstraint
delete_OpenBabel__OBFFConstraints delete_OpenBabel__OBFFParameter
delete_OpenBabel__OBFingerprint delete_OpenBabel__OBForceField
delete_OpenBabel__OBFormat delete_OpenBabel__OBGenericData
delete_OpenBabel__OBGlobalDataBase delete_OpenBabel__OBGridData
delete_OpenBabel__OBInternalCoord delete_OpenBabel__OBIsotopeTable
delete_OpenBabel__OBMatrixData delete_OpenBabel__OBMessageHandler
delete_OpenBabel__OBMol delete_OpenBabel__OBMolAngleIter
delete_OpenBabel__OBMolAtomBFSIter delete_OpenBabel__OBMolAtomDFSIter
delete_OpenBabel__OBMolAtomIter delete_OpenBabel__OBMolBondBFSIter
delete_OpenBabel__OBMolBondIter delete_OpenBabel__OBMolPairIter
delete_OpenBabel__OBMolRingIter delete_OpenBabel__OBMolTorsionIter
delete_OpenBabel__OBOp delete_OpenBabel__OBOrbital
delete_OpenBabel__OBOrbitalData delete_OpenBabel__OBPairData
delete_OpenBabel__OBPlugin delete_OpenBabel__OBRTree
delete_OpenBabel__OBRandom delete_OpenBabel__OBResidue
delete_OpenBabel__OBResidueAtomIter delete_OpenBabel__OBResidueData
delete_OpenBabel__OBResidueIter delete_OpenBabel__OBRing
delete_OpenBabel__OBRingData delete_OpenBabel__OBRingSearch
delete_OpenBabel__OBRingTyper delete_OpenBabel__OBRotationData
delete_OpenBabel__OBSSMatch delete_OpenBabel__OBSerialNums
delete_OpenBabel__OBSetData delete_OpenBabel__OBSmartsMatcher
delete_OpenBabel__OBSmartsPattern delete_OpenBabel__OBSqrtTbl
delete_OpenBabel__OBStopwatch delete_OpenBabel__OBSymmetryData
delete_OpenBabel__OBTorsion delete_OpenBabel__OBTorsionData
delete_OpenBabel__OBTypeTable delete_OpenBabel__OBUnitCell
delete_OpenBabel__OBVectorData delete_OpenBabel__OBVibrationData
delete_OpenBabel__OBVirtualBond delete_OpenBabel__SpaceGroup
delete_OpenBabel__matrix3x3 delete_OpenBabel__obLogBuf
delete_OpenBabel__transform3d delete_OpenBabel__vector3
delete_std__binary_functionT_char_const_p_char_const_p_bool_t
delete_std__pairT_unsigned_int_unsigned_int_t delete_std__stringbuf
delete_std__vectorT_OpenBabel__OBBond_std__allocatorT_OpenBabel__OBBond_t_t
delete_std__vectorT_OpenBabel__OBGenericData_p_std__allocatorT_OpenBabel__OBGenericData_p_t_t
delete_std__vectorT_OpenBabel__OBInternalCoord_p_std__allocatorT_OpenBabel__OBInternalCoord_p_t_t
delete_std__vectorT_OpenBabel__OBMol_std__allocatorT_OpenBabel__OBMol_t_t
delete_std__vectorT_OpenBabel__OBResidue_std__allocatorT_OpenBabel__OBResidue_t_t
delete_std__vectorT_OpenBabel__OBRing_p_std__allocatorT_OpenBabel__OBRing_p_t_t
delete_std__vectorT_OpenBabel__OBRing_std__allocatorT_OpenBabel__OBRing_t_t
delete_std__vectorT_OpenBabel__vector3_std__allocatorT_OpenBabel__vector3_t_t
delete_std__vectorT_double_std__allocatorT_double_t_t
delete_std__vectorT_int_std__allocatorT_int_t_t
delete_std__vectorT_std__pairT_unsigned_int_unsigned_int_t_std__allocatorT_std__pairT_unsigned_int_unsigned_int_t_t_t
delete_std__vectorT_std__string_std__allocatorT_std__string_t_t
delete_std__vectorT_std__vectorT_OpenBabel__vector3_std__allocatorT_OpenBabel__vector3_t_t_std__allocatorT_std__vectorT_OpenBabel__vector3_std__allocatorT_OpenBabel__vector3_t_t_t_t
delete_std__vectorT_std__vectorT_int_std__allocatorT_int_t_t_std__allocatorT_std__vectorT_int_std__allocatorT_int_t_t_t_t
delete_std__vectorT_std__vectorT_std__pairT_unsigned_int_unsigned_int_t_std__allocatorT_std__pairT_unsigned_int_unsigned_int_t_t_t_std__allocatorT_std__vectorT_std__pairT_unsigned_int_unsigned_int_t_std__allocatorT_std__pairT_unsigned_int_unsigned_int_t_t_t_t_t
delete_std__vectorT_unsigned_int_std__allocatorT_unsigned_int_t_t
* checking Rd files ... NOTE
prepare_Rd: canonicalNumbering_OB.Rd:30-32: Dropping empty section \note
prepare_Rd: forEachMol.Rd:48-50: Dropping empty section \seealso
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in shell scripts ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... NOTE
Note: information on .o files for i386 is not available
Note: information on .o files for x64 is not available
File 'C:/Users/biocbuild/bbs-3.7-bioc/R/library/ChemmineOB/libs/i386/ChemmineOB.dll':
Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
Found 'exit', possibly from 'exit' (C), 'stop' (Fortran)
Found 'printf', possibly from 'printf' (C)
Found 'rand', possibly from 'rand' (C)
Found 'srand', possibly from 'srand' (C)
Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs. The detected symbols are linked into the code but
might come from libraries and not actually be called.
See 'Writing portable packages' in the 'Writing R Extensions' manual.
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
Running 'runTests.R'
OK
** running tests for arch 'x64' ...
Running 'runTests.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 6 NOTEs
See
'C:/Users/biocbuild/bbs-3.7-bioc/meat/ChemmineOB.Rcheck/00check.log'
for details.