Peter Humburg
| Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018) |
| URL: https://git.bioconductor.org/packages/ChIPseqR |
| Branch: RELEASE_3_7 |
| Last Commit: 82c0379 |
| Last Changed Date: 2018-04-30 10:35:12 -0400 (Mon, 30 Apr 2018) |
| Back to Multiple platform build/check report for BioC 3.7 |
|
This page was generated on 2018-10-17 08:34:28 -0400 (Wed, 17 Oct 2018).
| Package 235/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| ChIPseqR 1.34.0 Peter Humburg
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | |
| Package: ChIPseqR |
| Version: 1.34.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/ChIPseqR_1.34.0.tar.gz && rm -rf ChIPseqR.buildbin-libdir && mkdir ChIPseqR.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ChIPseqR.buildbin-libdir ChIPseqR_1.34.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL ChIPseqR_1.34.0.zip && rm ChIPseqR_1.34.0.tar.gz ChIPseqR_1.34.0.zip |
| StartedAt: 2018-10-16 19:40:07 -0400 (Tue, 16 Oct 2018) |
| EndedAt: 2018-10-16 19:41:36 -0400 (Tue, 16 Oct 2018) |
| EllapsedTime: 88.7 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/ChIPseqR_1.34.0.tar.gz && rm -rf ChIPseqR.buildbin-libdir && mkdir ChIPseqR.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ChIPseqR.buildbin-libdir ChIPseqR_1.34.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL ChIPseqR_1.34.0.zip && rm ChIPseqR_1.34.0.tar.gz ChIPseqR_1.34.0.zip
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install for i386
* installing *source* package 'ChIPseqR' ...
** libs
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c startScore.c -o startScore.o
startScore.c: In function '_ratioStat_pois':
startScore.c:66:15: warning: unused variable 'tmp_stat' [-Wunused-variable]
double stat, tmp_stat;
^
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o ChIPseqR.dll tmp.def startScore.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/ChIPseqR.buildbin-libdir/ChIPseqR/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
Warning: replacing previous import 'BiocGenerics::image' by 'graphics::image' when loading 'ChIPseqR'
Warning: replacing previous import 'S4Vectors::head' by 'utils::head' when loading 'ChIPseqR'
Warning: replacing previous import 'S4Vectors::tail' by 'utils::tail' when loading 'ChIPseqR'
** help
*** installing help indices
converting help for package 'ChIPseqR'
finding HTML links ... done
BindScore html
ChIPseqR-package html
RLEBindScore-class html
finding level-2 HTML links ... done
RLEReadCounts-class html
ReadCounts html
accessors html
alignFeature html
callBindingSites html
compress-BindScore html
compress-ReadCounts html
compress-methods html
decompress-methods html
decompress html
exportBindSequence html
getBindCor html
getBindLen html
getCutoff html
internal html
pickPeak html
plot-BindScore html
plot-ReadCounts html
plotReads html
plotWindow html
pos2gff html
simpleNucCall html
startScore html
strandPileup html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp6LDq8o/R.INSTALLfe414fae6a/ChIPseqR/man/strandPileup.Rd:29: file link 'coverage' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/Rtmp6LDq8o/R.INSTALLfe414fae6a/ChIPseqR/man/strandPileup.Rd:46: file link 'coverage' in package 'IRanges' does not exist and so has been treated as a topic
windowCounts html
** building package indices
** installing vignettes
** testing if installed package can be loaded
Warning: replacing previous import 'BiocGenerics::image' by 'graphics::image' when loading 'ChIPseqR'
Warning: replacing previous import 'S4Vectors::head' by 'utils::head' when loading 'ChIPseqR'
Warning: replacing previous import 'S4Vectors::tail' by 'utils::tail' when loading 'ChIPseqR'
In R CMD INSTALL
install for x64
* installing *source* package 'ChIPseqR' ...
** libs
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c startScore.c -o startScore.o
startScore.c: In function '_ratioStat_pois':
startScore.c:66:15: warning: unused variable 'tmp_stat' [-Wunused-variable]
double stat, tmp_stat;
^
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o ChIPseqR.dll tmp.def startScore.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/ChIPseqR.buildbin-libdir/ChIPseqR/libs/x64
** testing if installed package can be loaded
Warning: replacing previous import 'BiocGenerics::image' by 'graphics::image' when loading 'ChIPseqR'
Warning: replacing previous import 'S4Vectors::head' by 'utils::head' when loading 'ChIPseqR'
Warning: replacing previous import 'S4Vectors::tail' by 'utils::tail' when loading 'ChIPseqR'
* MD5 sums
packaged installation of 'ChIPseqR' as ChIPseqR_1.34.0.zip
* DONE (ChIPseqR)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'ChIPseqR' successfully unpacked and MD5 sums checked
In R CMD INSTALL