Diana LOW
| Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018) |
| URL: https://git.bioconductor.org/packages/CONFESS |
| Branch: RELEASE_3_7 |
| Last Commit: 2fe8958 |
| Last Changed Date: 2018-04-30 10:35:41 -0400 (Mon, 30 Apr 2018) |
| Back to Multiple platform build/check report for BioC 3.7 |
|
This page was generated on 2018-10-17 08:42:05 -0400 (Wed, 17 Oct 2018).
| Package 297/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| CONFESS 1.8.0 Diana LOW
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ WARNINGS ] | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | |
| Package: CONFESS |
| Version: 1.8.0 |
| Command: C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe --arch x64 CMD check --no-multiarch --install=check:CONFESS.install-out.txt --library=C:\Users\biocbuild\bbs-3.7-bioc\R\library --no-vignettes --timings CONFESS_1.8.0.tar.gz |
| StartedAt: 2018-10-17 01:18:24 -0400 (Wed, 17 Oct 2018) |
| EndedAt: 2018-10-17 01:22:39 -0400 (Wed, 17 Oct 2018) |
| EllapsedTime: 254.9 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: CONFESS.Rcheck |
| Warnings: 1 |
##############################################################################
##############################################################################
###
### Running command:
###
### C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe --arch x64 CMD check --no-multiarch --install=check:CONFESS.install-out.txt --library=C:\Users\biocbuild\bbs-3.7-bioc\R\library --no-vignettes --timings CONFESS_1.8.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'C:/Users/biocbuild/bbs-3.7-bioc/meat/CONFESS.Rcheck'
* using R version 3.5.1 Patched (2018-07-24 r75005)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'CONFESS/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'CONFESS' version '1.8.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
.BBSoptions
These were most likely included in error. See section 'Package
structure' in the 'Writing R Extensions' manual.
* checking for portable file names ... OK
* checking whether package 'CONFESS' can be installed ... WARNING
Found the following significant warnings:
Warning: replacing previous import 'stats::BIC' by 'flowMerge::BIC' when loading 'CONFESS'
See 'C:/Users/biocbuild/bbs-3.7-bioc/meat/CONFESS.Rcheck/00install.out' for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
Fluo_CV_prep 29.21 0.50 29.72
Fluo_adjustment 25.57 0.06 25.64
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 1 NOTE
See
'C:/Users/biocbuild/bbs-3.7-bioc/meat/CONFESS.Rcheck/00check.log'
for details.
CONFESS.Rcheck/00install.out
##############################################################################
##############################################################################
###
### Running command:
###
### C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe --arch x64 CMD INSTALL --no-multiarch CONFESS
###
##############################################################################
##############################################################################
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
* installing *source* package 'CONFESS' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Warning: replacing previous import 'stats::BIC' by 'flowMerge::BIC' when loading 'CONFESS'
** help
*** installing help indices
converting help for package 'CONFESS'
finding HTML links ... done
BGcorrectFluo html
BatchFluo html
CVsampler html
DDHFfit html
DDHFinput html
FluoInspection html
FluoSelection_byRun html
Fluo_CV_modeling html
Fluo_CV_prep html
Fluo_adjustment html
Fluo_inspection html
Fluo_modeling html
Fluo_ordering html
GAPanalysis html
GrubbsOutliers html
LocationMatrix html
Results html
SpotStats html
SpotbyStrLines html
addKpredictions html
adjustFluo html
aveDiff html
boxFluo html
boxcoxMatrix html
boxcoxMatrixEst html
caseof0s html
caseof1R0G html
caseof1R1G html
caseof1R2G html
caseof2R1G html
caseof2R2G html
caseof2Rs0G html
clu html
cluster2outlier html
contrastFluo html
cpPELT html
cpoints html
createFluo html
cutpointsEstimator html
ddhft.np.2 html
defineLocClusters html
denoisefun html
denoiser html
despecklefun html
diagnoseResiduals html
distfromcenter html
doTransform html
estimate.new.pseudotimes html
estimatePath html
estimates.2 html
estimates html
extractBFArea html
failurecase html
fclust html
files html
filled.contour3 html
findPattern html
fixPath html
flowclust_step1 html
flowclust_step2 html
forceBF html
function.from.vector html
getCoordinates_stats html
getCsFAIL html
getFluo html
getFluo_byRun html
getSpot html
giveWarning html
grouplines html
grubbs html
highlight.cols html
invTransform html
isotone html
joinAreas html
listSorter html
lmFluo html
mean_signal html
measureB html
measureF html
multiplot html
myt html
orderFluo html
path.initiator html
pathEstimator html
pathUpdater html
plotImages html
plot_clusgap html
predict.kmeans html
processImg html
project html
readChaImg html
readFiles html
readOriImg html
reestimate.pseudos.byCV html
refineMixes html
revDDHFinput html
signal.from.matrix html
significantSignal html
simcells html
sortCentroids html
spot.simulator html
spotCenter html
spotCoords html
spotEstimator html
step1 html
step2.1 html
step2 html
step3.1 html
step3 html
step4 html
steps2_4 html
straightColLines html
straightRowLines html
subsetAnalysis html
summarizeAdjFluo html
transformFluo html
trigofun html
unnormalizeC01 html
updateCentroids html
updateCentroidsPaths html
which.min.diff html
zoomInBF html
** building package indices
** installing vignettes
** testing if installed package can be loaded
Warning: replacing previous import 'stats::BIC' by 'flowMerge::BIC' when loading 'CONFESS'
* DONE (CONFESS)
Making 'packages.html' ... done
In R CMD INSTALL
CONFESS.Rcheck/CONFESS-Ex.timings
| name | user | system | elapsed | |
| FluoSelection_byRun | 0.03 | 0.00 | 0.05 | |
| Fluo_CV_modeling | 0 | 0 | 0 | |
| Fluo_CV_prep | 29.21 | 0.50 | 29.72 | |
| Fluo_adjustment | 25.57 | 0.06 | 25.64 | |
| Fluo_inspection | 2.39 | 0.08 | 2.47 | |
| Fluo_modeling | 4.30 | 0.26 | 4.56 | |
| Fluo_ordering | 1.45 | 0.01 | 1.47 | |
| LocationMatrix | 0.02 | 0.00 | 0.01 | |
| cluster2outlier | 0 | 0 | 0 | |
| createFluo | 0.02 | 0.00 | 0.02 | |
| defineLocClusters | 0.06 | 0.00 | 0.08 | |
| files | 0 | 0 | 0 | |
| getFluo | 0.03 | 0.00 | 0.03 | |
| getFluo_byRun | 0.07 | 0.00 | 0.06 | |
| pathEstimator | 0 | 0 | 0 | |
| readFiles | 0.03 | 0.00 | 0.04 | |
| simcells | 4.86 | 0.05 | 4.90 | |
| spotEstimator | 0.01 | 0.00 | 0.02 | |