Hui Zhao
| Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018) |
| URL: https://git.bioconductor.org/packages/CALIB |
| Branch: RELEASE_3_7 |
| Last Commit: 9e4bdb0 |
| Last Changed Date: 2018-04-30 10:35:06 -0400 (Mon, 30 Apr 2018) |
| Back to Multiple platform build/check report for BioC 3.7 |
|
This page was generated on 2018-10-17 08:33:11 -0400 (Wed, 17 Oct 2018).
| Package 180/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| CALIB 1.46.0 Hui Zhao
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | [ OK ] | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | |
| Package: CALIB |
| Version: 1.46.0 |
| Command: rm -rf CALIB.buildbin-libdir && mkdir CALIB.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CALIB.buildbin-libdir CALIB_1.46.0.tar.gz |
| StartedAt: 2018-10-17 06:06:56 -0400 (Wed, 17 Oct 2018) |
| EndedAt: 2018-10-17 06:07:27 -0400 (Wed, 17 Oct 2018) |
| EllapsedTime: 31.6 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: CALIB_1.46.0.zip |
| PackageFileSize: 2.35 MiB |
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### Running command:
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### rm -rf CALIB.buildbin-libdir && mkdir CALIB.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CALIB.buildbin-libdir CALIB_1.46.0.tar.gz
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install for i386
* installing *source* package 'CALIB' ...
** libs
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c Design.cpp -o Design.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c Estimation.cpp -o Estimation.o
Estimation.cpp: In function 'SEXPREC* estimation(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
Estimation.cpp:147:78: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
char *name[8] = {"MuS","Ka","P1","P2","SigmaA","SigmaM","SigmaS","SpotError"};
^
Estimation.cpp:147:78: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Estimation.cpp:147:78: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Estimation.cpp:147:78: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Estimation.cpp:147:78: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Estimation.cpp:147:78: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Estimation.cpp:147:78: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Estimation.cpp:147:78: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c NormalizedData.cpp -o NormalizedData.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c ParameterofOneArray.cpp -o ParameterofOneArray.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c RawDataofOneArray.cpp -o RawDataofOneArray.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c SpikeofOneArray.cpp -o SpikeofOneArray.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o CALIB.dll tmp.def Design.o Estimation.o NormalizedData.o ParameterofOneArray.o RawDataofOneArray.o SpikeofOneArray.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/CALIB.buildbin-libdir/CALIB/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'CALIB'
finding HTML links ... done
ParameterList-class html
RG html
RGList_CALIB-class html
SpikeList-class html
adjustP2 html
calibReadMe html
cbind html
dim html
dimnames html
estimateParameter html
getColClasses html
merge html
normalizeData html
normdata html
parameter html
plotNormalizedData html
plotSpikeCI html
plotSpikeHI html
plotSpikeRG html
plotSpikeSpotError html
read.rg html
read.spike html
spike html
subsetting html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'CALIB' ...
** libs
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c Design.cpp -o Design.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c Estimation.cpp -o Estimation.o
Estimation.cpp: In function 'SEXPREC* estimation(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
Estimation.cpp:147:78: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
char *name[8] = {"MuS","Ka","P1","P2","SigmaA","SigmaM","SigmaS","SpotError"};
^
Estimation.cpp:147:78: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Estimation.cpp:147:78: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Estimation.cpp:147:78: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Estimation.cpp:147:78: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Estimation.cpp:147:78: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Estimation.cpp:147:78: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
Estimation.cpp:147:78: warning: deprecated conversion from string constant to 'char*' [-Wwrite-strings]
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c NormalizedData.cpp -o NormalizedData.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c ParameterofOneArray.cpp -o ParameterofOneArray.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c RawDataofOneArray.cpp -o RawDataofOneArray.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c SpikeofOneArray.cpp -o SpikeofOneArray.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o CALIB.dll tmp.def Design.o Estimation.o NormalizedData.o ParameterofOneArray.o RawDataofOneArray.o SpikeofOneArray.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/CALIB.buildbin-libdir/CALIB/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'CALIB' as CALIB_1.46.0.zip
* DONE (CALIB)
In R CMD INSTALL
In R CMD INSTALL