Jitao David Zhang
| Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018) |
| URL: https://git.bioconductor.org/packages/BioQC |
| Branch: RELEASE_3_7 |
| Last Commit: f043d16 |
| Last Changed Date: 2018-04-30 10:35:39 -0400 (Mon, 30 Apr 2018) |
| Back to Multiple platform build/check report for BioC 3.7 |
|
This page was generated on 2018-10-17 08:41:25 -0400 (Wed, 17 Oct 2018).
| Package 146/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| BioQC 1.8.0 Jitao David Zhang
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: BioQC |
| Version: 1.8.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/BioQC_1.8.0.tar.gz && rm -rf BioQC.buildbin-libdir && mkdir BioQC.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BioQC.buildbin-libdir BioQC_1.8.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL BioQC_1.8.0.zip && rm BioQC_1.8.0.tar.gz BioQC_1.8.0.zip |
| StartedAt: 2018-10-16 18:40:43 -0400 (Tue, 16 Oct 2018) |
| EndedAt: 2018-10-16 18:41:46 -0400 (Tue, 16 Oct 2018) |
| EllapsedTime: 63.0 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/BioQC_1.8.0.tar.gz && rm -rf BioQC.buildbin-libdir && mkdir BioQC.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BioQC.buildbin-libdir BioQC_1.8.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL BioQC_1.8.0.zip && rm BioQC_1.8.0.tar.gz BioQC_1.8.0.zip
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install for i386
* installing *source* package 'BioQC' ...
** libs
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG `C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/Rscript -e 'Rcpp:::CxxFlags()'` -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c gini.c -o gini.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG `C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/Rscript -e 'Rcpp:::CxxFlags()'` -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c init.c -o init.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG `C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/Rscript -e 'Rcpp:::CxxFlags()'` -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c read_gmt.cpp -o read_gmt.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG `C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/Rscript -e 'Rcpp:::CxxFlags()'` -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c stat_rank.c -o stat_rank.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG `C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/Rscript -e 'Rcpp:::CxxFlags()'` -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c wmw_test.c -o wmw_test.o
wmw_test.c: In function 'wmw_test_list':
wmw_test.c:105:0: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
#pragma omp parallel for
^
wmw_test.c: In function 'wmw_test':
wmw_test.c:152:0: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
#pragma omp parallel for
^
wmw_test.c: In function 'signed_wmw_test_list':
wmw_test.c:185:0: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
#pragma omp parallel for
^
wmw_test.c: In function 'signed_wmw_test':
wmw_test.c:248:0: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
#pragma omp parallel for
^
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o BioQC.dll tmp.def gini.o init.o read_gmt.o stat_rank.o wmw_test.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/BioQC.buildbin-libdir/BioQC/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'BioQC'
finding HTML links ... done
BaseIndexList-class html
GmtList-class html
GmtList html
IndexList-class html
IndexList html
SignedGenesets-class html
SignedGenesets html
SignedIndexList-class html
SignedIndexList html
absLog10p html
as.gmtlist html
entropy html
filterPmat html
gini html
gmtlist2signedGenesets html
matchGenes html
offset-BaseIndexList-method html
offset-set html
readGmt html
readSignedGmt html
simplifyMatrix html
valTypes html
wmwTest html
wmwTestInR html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'BioQC' ...
** libs
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG `C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/Rscript -e 'Rcpp:::CxxFlags()'` -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c gini.c -o gini.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG `C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/Rscript -e 'Rcpp:::CxxFlags()'` -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c init.c -o init.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG `C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/Rscript -e 'Rcpp:::CxxFlags()'` -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c read_gmt.cpp -o read_gmt.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG `C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/Rscript -e 'Rcpp:::CxxFlags()'` -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c stat_rank.c -o stat_rank.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG `C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/Rscript -e 'Rcpp:::CxxFlags()'` -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c wmw_test.c -o wmw_test.o
wmw_test.c: In function 'wmw_test_list':
wmw_test.c:105:0: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
#pragma omp parallel for
^
wmw_test.c: In function 'wmw_test':
wmw_test.c:152:0: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
#pragma omp parallel for
^
wmw_test.c: In function 'signed_wmw_test_list':
wmw_test.c:185:0: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
#pragma omp parallel for
^
wmw_test.c: In function 'signed_wmw_test':
wmw_test.c:248:0: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
#pragma omp parallel for
^
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o BioQC.dll tmp.def gini.o init.o read_gmt.o stat_rank.o wmw_test.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/BioQC.buildbin-libdir/BioQC/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'BioQC' as BioQC_1.8.0.zip
* DONE (BioQC)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'BioQC' successfully unpacked and MD5 sums checked
In R CMD INSTALL