Andrea Gobbi
| Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018) |
| URL: https://git.bioconductor.org/packages/BiRewire |
| Branch: RELEASE_3_7 |
| Last Commit: 5e49405 |
| Last Changed Date: 2018-04-30 10:35:31 -0400 (Mon, 30 Apr 2018) |
| Back to Multiple platform build/check report for BioC 3.7 |
|
This page was generated on 2018-10-17 08:37:40 -0400 (Wed, 17 Oct 2018).
| Package 153/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| BiRewire 3.12.0 Andrea Gobbi
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: BiRewire |
| Version: 3.12.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/BiRewire_3.12.0.tar.gz && rm -rf BiRewire.buildbin-libdir && mkdir BiRewire.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BiRewire.buildbin-libdir BiRewire_3.12.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL BiRewire_3.12.0.zip && rm BiRewire_3.12.0.tar.gz BiRewire_3.12.0.zip |
| StartedAt: 2018-10-16 18:57:30 -0400 (Tue, 16 Oct 2018) |
| EndedAt: 2018-10-16 18:58:25 -0400 (Tue, 16 Oct 2018) |
| EllapsedTime: 55.1 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/BiRewire_3.12.0.tar.gz && rm -rf BiRewire.buildbin-libdir && mkdir BiRewire.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BiRewire.buildbin-libdir BiRewire_3.12.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL BiRewire_3.12.0.zip && rm BiRewire_3.12.0.tar.gz BiRewire_3.12.0.zip
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install for i386
* installing *source* package 'BiRewire' ...
** libs
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c BiRewire.c -o BiRewire.o
BiRewire.c: In function 'rewire_sparse':
BiRewire.c:1066:16: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
if( a!=c && b!=d & a!=d && c!=b && (( ad==1 && cb==1 )|| (ac==1 && bd==1) )) {
^
BiRewire.c: In function 'rewire_sparse_ex':
BiRewire.c:1149:16: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
if( a!=c && b!=d & a!=d && c!=b && (( ad==1 && cb==1 )|| (ac==1 && bd==1) )) {
^
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c interface.c -o interface.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o BiRewire.dll tmp.def BiRewire.o interface.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/BiRewire.buildbin-libdir/BiRewire/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'BiRewire'
finding HTML links ... done
BRCA_binary_matrix html
BiRewire-package html
birewire.analysis.bipartite html
finding level-2 HTML links ... done
birewire.analysis.dsg html
birewire.analysis.undirected html
birewire.bipartite.from.incidence html
birewire.build.dsg html
birewire.induced.bipartite html
birewire.load.dsg html
birewire.rewire.bipartite html
birewire.rewire.bipartite.and.projections
html
birewire.rewire.dsg html
birewire.rewire.undirected html
birewire.sampler.bipartite html
birewire.sampler.dsg html
birewire.sampler.undirected html
birewire.similarity html
birewire.similarity.dsg html
birewire.slum.to.sparseMatrix html
birewire.visual.monitoring.bipartite html
birewire.visual.monitoring.dsg html
birewire.visual.monitoring.undirected html
test_dsg html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'BiRewire' ...
** libs
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c BiRewire.c -o BiRewire.o
BiRewire.c: In function 'rewire_sparse':
BiRewire.c:1066:16: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
if( a!=c && b!=d & a!=d && c!=b && (( ad==1 && cb==1 )|| (ac==1 && bd==1) )) {
^
BiRewire.c: In function 'rewire_sparse_ex':
BiRewire.c:1149:16: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
if( a!=c && b!=d & a!=d && c!=b && (( ad==1 && cb==1 )|| (ac==1 && bd==1) )) {
^
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c interface.c -o interface.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o BiRewire.dll tmp.def BiRewire.o interface.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/BiRewire.buildbin-libdir/BiRewire/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'BiRewire' as BiRewire_3.12.0.zip
* DONE (BiRewire)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'BiRewire' successfully unpacked and MD5 sums checked
In R CMD INSTALL