Back to Multiple platform build/check report for BioC 3.7 |
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This page was generated on 2018-10-17 08:58:53 -0400 (Wed, 17 Oct 2018).
Package 95/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
BASiCS 1.2.1 Catalina A. Vallejos
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | [ OK ] | OK | OK | OK |
Package: BASiCS |
Version: 1.2.1 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL BASiCS |
StartedAt: 2018-10-16 15:58:20 -0400 (Tue, 16 Oct 2018) |
EndedAt: 2018-10-16 16:01:05 -0400 (Tue, 16 Oct 2018) |
EllapsedTime: 164.6 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL BASiCS ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/3.5/Resources/library’ * installing *source* package ‘BASiCS’ ... ** libs clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/RcppArmadillo/include" -I/usr/local/include -fPIC -Wall -g -O2 -c BASiCS_DenoisedRates.cpp -o BASiCS_DenoisedRates.o In file included from BASiCS_DenoisedRates.cpp:1: In file included from ./utils.h:1: In file included from ./MCMCcpp.h:15: In file included from /Library/Frameworks/R.framework/Versions/3.5/Resources/library/RcppArmadillo/include/RcppArmadillo.h:31: In file included from /Library/Frameworks/R.framework/Versions/3.5/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:26: In file included from /Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include/RcppCommon.h:128: /Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include/Rcpp/exceptions.h:109:53: warning: all paths through this function will call itself [-Winfinite-recursion] inline void warning(const std::string& message) { // #nocov start ^ 1 warning generated. clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/RcppArmadillo/include" -I/usr/local/include -fPIC -Wall -g -O2 -c BASiCS_MCMCcpp.cpp -o BASiCS_MCMCcpp.o In file included from BASiCS_MCMCcpp.cpp:1: In file included from ./utils.h:1: In file included from ./MCMCcpp.h:15: In file included from /Library/Frameworks/R.framework/Versions/3.5/Resources/library/RcppArmadillo/include/RcppArmadillo.h:31: In file included from /Library/Frameworks/R.framework/Versions/3.5/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:26: In file included from /Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include/RcppCommon.h:128: /Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include/Rcpp/exceptions.h:109:53: warning: all paths through this function will call itself [-Winfinite-recursion] inline void warning(const std::string& message) { // #nocov start ^ 1 warning generated. clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/RcppArmadillo/include" -I/usr/local/include -fPIC -Wall -g -O2 -c BASiCS_MCMCcppNoSpikes.cpp -o BASiCS_MCMCcppNoSpikes.o In file included from BASiCS_MCMCcppNoSpikes.cpp:1: In file included from ./utils.h:1: In file included from ./MCMCcpp.h:15: In file included from /Library/Frameworks/R.framework/Versions/3.5/Resources/library/RcppArmadillo/include/RcppArmadillo.h:31: In file included from /Library/Frameworks/R.framework/Versions/3.5/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:26: In file included from /Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include/RcppCommon.h:128: /Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include/Rcpp/exceptions.h:109:53: warning: all paths through this function will call itself [-Winfinite-recursion] inline void warning(const std::string& message) { // #nocov start ^ 1 warning generated. clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/RcppArmadillo/include" -I/usr/local/include -fPIC -Wall -g -O2 -c BASiCS_MCMCcppReg.cpp -o BASiCS_MCMCcppReg.o In file included from BASiCS_MCMCcppReg.cpp:1: In file included from ./utils.h:1: In file included from ./MCMCcpp.h:15: In file included from /Library/Frameworks/R.framework/Versions/3.5/Resources/library/RcppArmadillo/include/RcppArmadillo.h:31: In file included from /Library/Frameworks/R.framework/Versions/3.5/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:26: In file included from /Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include/RcppCommon.h:128: /Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include/Rcpp/exceptions.h:109:53: warning: all paths through this function will call itself [-Winfinite-recursion] inline void warning(const std::string& message) { // #nocov start ^ 1 warning generated. clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/RcppArmadillo/include" -I/usr/local/include -fPIC -Wall -g -O2 -c BASiCS_MCMCcppRegNoSpikes.cpp -o BASiCS_MCMCcppRegNoSpikes.o In file included from BASiCS_MCMCcppRegNoSpikes.cpp:1: In file included from ./utils.h:1: In file included from ./MCMCcpp.h:15: In file included from /Library/Frameworks/R.framework/Versions/3.5/Resources/library/RcppArmadillo/include/RcppArmadillo.h:31: In file included from /Library/Frameworks/R.framework/Versions/3.5/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:26: In file included from /Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include/RcppCommon.h:128: /Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include/Rcpp/exceptions.h:109:53: warning: all paths through this function will call itself [-Winfinite-recursion] inline void warning(const std::string& message) { // #nocov start ^ 1 warning generated. clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/RcppArmadillo/include" -I/usr/local/include -fPIC -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/RcppArmadillo/include" -I/usr/local/include -fPIC -Wall -g -O2 -c general_utils.cpp -o general_utils.o In file included from general_utils.cpp:1: In file included from ./utils.h:1: In file included from ./MCMCcpp.h:15: In file included from /Library/Frameworks/R.framework/Versions/3.5/Resources/library/RcppArmadillo/include/RcppArmadillo.h:31: In file included from /Library/Frameworks/R.framework/Versions/3.5/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:26: In file included from /Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include/RcppCommon.h:128: /Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include/Rcpp/exceptions.h:109:53: warning: all paths through this function will call itself [-Winfinite-recursion] inline void warning(const std::string& message) { // #nocov start ^ 1 warning generated. clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/RcppArmadillo/include" -I/usr/local/include -fPIC -Wall -g -O2 -c utils_MCMCcpp.cpp -o utils_MCMCcpp.o In file included from utils_MCMCcpp.cpp:1: In file included from ./utils.h:1: In file included from ./MCMCcpp.h:15: In file included from /Library/Frameworks/R.framework/Versions/3.5/Resources/library/RcppArmadillo/include/RcppArmadillo.h:31: In file included from /Library/Frameworks/R.framework/Versions/3.5/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:26: In file included from /Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include/RcppCommon.h:128: /Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include/Rcpp/exceptions.h:109:53: warning: all paths through this function will call itself [-Winfinite-recursion] inline void warning(const std::string& message) { // #nocov start ^ 1 warning generated. clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/RcppArmadillo/include" -I/usr/local/include -fPIC -Wall -g -O2 -c utils_MCMCcppNoSpikes.cpp -o utils_MCMCcppNoSpikes.o In file included from utils_MCMCcppNoSpikes.cpp:1: In file included from ./utils.h:1: In file included from ./MCMCcpp.h:15: In file included from /Library/Frameworks/R.framework/Versions/3.5/Resources/library/RcppArmadillo/include/RcppArmadillo.h:31: In file included from /Library/Frameworks/R.framework/Versions/3.5/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:26: In file included from /Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include/RcppCommon.h:128: /Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include/Rcpp/exceptions.h:109:53: warning: all paths through this function will call itself [-Winfinite-recursion] inline void warning(const std::string& message) { // #nocov start ^ 1 warning generated. clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/RcppArmadillo/include" -I/usr/local/include -fPIC -Wall -g -O2 -c utils_MCMCcppReg.cpp -o utils_MCMCcppReg.o In file included from utils_MCMCcppReg.cpp:1: In file included from ./utils.h:1: In file included from ./MCMCcpp.h:15: In file included from /Library/Frameworks/R.framework/Versions/3.5/Resources/library/RcppArmadillo/include/RcppArmadillo.h:31: In file included from /Library/Frameworks/R.framework/Versions/3.5/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:26: In file included from /Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include/RcppCommon.h:128: /Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include/Rcpp/exceptions.h:109:53: warning: all paths through this function will call itself [-Winfinite-recursion] inline void warning(const std::string& message) { // #nocov start ^ 1 warning generated. clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/RcppArmadillo/include" -I/usr/local/include -fPIC -Wall -g -O2 -c utils_MCMCcppRegNoSpikes.cpp -o utils_MCMCcppRegNoSpikes.o In file included from utils_MCMCcppRegNoSpikes.cpp:1: In file included from ./utils.h:1: In file included from ./MCMCcpp.h:15: In file included from /Library/Frameworks/R.framework/Versions/3.5/Resources/library/RcppArmadillo/include/RcppArmadillo.h:31: In file included from /Library/Frameworks/R.framework/Versions/3.5/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:26: In file included from /Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include/RcppCommon.h:128: /Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include/Rcpp/exceptions.h:109:53: warning: all paths through this function will call itself [-Winfinite-recursion] inline void warning(const std::string& message) { // #nocov start ^ 1 warning generated. clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o BASiCS.so BASiCS_DenoisedRates.o BASiCS_MCMCcpp.o BASiCS_MCMCcppNoSpikes.o BASiCS_MCMCcppReg.o BASiCS_MCMCcppRegNoSpikes.o RcppExports.o general_utils.o utils_MCMCcpp.o utils_MCMCcppNoSpikes.o utils_MCMCcppReg.o utils_MCMCcppRegNoSpikes.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Library/Frameworks/R.framework/Versions/3.5/Resources/library/BASiCS/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (BASiCS)