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CHECK report for unifiedWMWqPCR on merida2

This page was generated on 2018-10-17 08:52:34 -0400 (Wed, 17 Oct 2018).

Package 1525/1561HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
unifiedWMWqPCR 1.16.0
Joris Meys
Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018)
URL: https://git.bioconductor.org/packages/unifiedWMWqPCR
Branch: RELEASE_3_7
Last Commit: 7f3afeb
Last Changed Date: 2018-04-30 10:35:32 -0400 (Mon, 30 Apr 2018)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK [ OK ] OK UNNEEDED, same version exists in internal repository

Summary

Package: unifiedWMWqPCR
Version: 1.16.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:unifiedWMWqPCR.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings unifiedWMWqPCR_1.16.0.tar.gz
StartedAt: 2018-10-17 00:34:22 -0400 (Wed, 17 Oct 2018)
EndedAt: 2018-10-17 00:35:24 -0400 (Wed, 17 Oct 2018)
EllapsedTime: 62.7 seconds
RetCode: 0
Status:  OK 
CheckDir: unifiedWMWqPCR.Rcheck
Warnings: 0

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:unifiedWMWqPCR.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings unifiedWMWqPCR_1.16.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.7-bioc/meat/unifiedWMWqPCR.Rcheck’
* using R version 3.5.1 Patched (2018-07-12 r74967)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘unifiedWMWqPCR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘unifiedWMWqPCR’ version ‘1.16.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘unifiedWMWqPCR’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

unifiedWMWqPCR.Rcheck/00install.out

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL unifiedWMWqPCR
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* installing to library ‘/Library/Frameworks/R.framework/Versions/3.5/Resources/library’
* installing *source* package ‘unifiedWMWqPCR’ ...
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Creating a generic function for ‘order’ from package ‘base’ in package ‘unifiedWMWqPCR’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (unifiedWMWqPCR)

Tests output


Example timings

unifiedWMWqPCR.Rcheck/unifiedWMWqPCR-Ex.timings

nameusersystemelapsed
NBdata0.0390.0050.044
as.matrix.uwmwEstimate0.4420.0390.483
as.matrix.uwmwRes0.4530.0230.478
forestplot-methods0.6880.0280.724
getEstimate-methods0.4820.0320.517
plot0.4990.0190.523
sort_uwmwRes0.4640.0210.485
uWMW-methods0.9440.0430.997
uwmw_Accessors0.4840.0210.507
uwmw_Extract0.4900.0240.522
volcanopar0.0010.0000.001
volcanoplot-methods0.4050.0200.431