Package: supraHex

Version: 1.18.0

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:supraHex.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings supraHex_1.18.0.tar.gz

StartedAt: 2018-10-17 00:19:55 -0400 (Wed, 17 Oct 2018)

EndedAt: 2018-10-17 00:20:58 -0400 (Wed, 17 Oct 2018)

EllapsedTime: 63.6 seconds

RetCode: 0

Status:  OK

CheckDir: supraHex.Rcheck

Warnings: 0

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:supraHex.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings supraHex_1.18.0.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.7-bioc/meat/supraHex.Rcheck’
* using R version 3.5.1 Patched (2018-07-12 r74967)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘supraHex/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘supraHex’ version ‘1.18.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘supraHex’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL supraHex
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* installing to library ‘/Library/Frameworks/R.framework/Versions/3.5/Resources/library’
* installing *source* package ‘supraHex’ ...
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (supraHex)

name	user	system	elapsed
sBMH	0.150	0.011	0.163
sCompReorder	0.769	0.086	0.859
sDistance	0.112	0.005	0.119
sDmat	0.122	0.011	0.134
sDmatCluster	0.199	0.008	0.207
sDmatMinima	0.114	0.006	0.120
sHexDist	0.016	0.002	0.018
sHexGrid	0.004	0.000	0.004
sHexGridVariant	0.014	0.001	0.016
sHexPolygon	0.004	0.000	0.004
sInitial	0.005	0.000	0.005
sMapOverlay	0.194	0.012	0.207
sNeighAny	0.009	0.001	0.009
sNeighDirect	0.007	0.000	0.008
sPipeline	1.664	0.030	1.701
sTopology	0.021	0.004	0.025
sTrainBatch	0.046	0.002	0.048
sTrainSeq	0.468	0.011	0.483
sTrainology	0.006	0.000	0.006
sWriteData	0.179	0.003	0.182
visColoralpha	0.020	0.002	0.022
visColorbar	0.053	0.000	0.054
visColormap	0.008	0.000	0.008
visCompReorder	0.987	0.105	1.098
visDmatCluster	0.318	0.037	0.357
visDmatHeatmap	0.247	0.006	0.253
visHeatmap	0.133	0.001	0.138
visHeatmapAdv	0.608	0.005	0.625
visHexAnimate	0.003	0.000	0.004
visHexBarplot	0.388	0.044	0.440
visHexComp	0.117	0.004	0.123
visHexGrid	0.107	0.006	0.118
visHexMapping	1.159	0.090	1.261
visHexMulComp	0.885	0.056	0.946
visHexPattern	1.364	0.099	1.471
visKernels	0.013	0.004	0.017
visTreeBSclust	0.085	0.001	0.087
visTreeBootstrap	0.202	0.003	0.210
visVp	0.026	0.006	0.032