Back to Multiple platform build/check report for BioC 3.7 |
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This page was generated on 2018-10-17 08:32:01 -0400 (Wed, 17 Oct 2018).
Package 1378/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
simpleaffy 2.56.0 Crispin Miller
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | WARNINGS | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | [ OK ] | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK |
Package: simpleaffy |
Version: 2.56.0 |
Command: rm -rf simpleaffy.buildbin-libdir && mkdir simpleaffy.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=simpleaffy.buildbin-libdir simpleaffy_2.56.0.tar.gz |
StartedAt: 2018-10-17 07:00:20 -0400 (Wed, 17 Oct 2018) |
EndedAt: 2018-10-17 07:00:51 -0400 (Wed, 17 Oct 2018) |
EllapsedTime: 31.3 seconds |
RetCode: 0 |
Status: OK |
PackageFile: simpleaffy_2.56.0.zip |
PackageFileSize: 801.2 KiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf simpleaffy.buildbin-libdir && mkdir simpleaffy.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=simpleaffy.buildbin-libdir simpleaffy_2.56.0.tar.gz ### ############################################################################## ############################################################################## install for i386 * installing *source* package 'simpleaffy' ... ** libs C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c simpleaffy.c -o simpleaffy.o simpleaffy.c: In function 'bgmas': simpleaffy.c:440:30: warning: passing argument 1 of 'REprintf' from incompatible pointer type if(gn >= ngrid) REprintf(stderr,"Really ouch! %d %d\n",gn,ends[gn]); ^ In file included from C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include/R.h:88:0, from simpleaffy.c:5: C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include/R_ext/Print.h:43:6: note: expected 'const char *' but argument is of type 'struct FILE *' void REprintf(const char *, ...); ^ C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o simpleaffy.dll tmp.def simpleaffy.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/simpleaffy.buildbin-libdir/simpleaffy/libs/i386 ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'simpleaffy' finding HTML links ... done PairComp-class html QCStats-class html all.present html all.present.in.group html bg.correct.sa html call.exprs html detection.p.val html get.annotation html get.array.indices html get.array.subset html get.array.subset.affy html get.fold.change.and.t.test html hmap.colors html hmap.eset html hmap.pc html journalpng html justMAS html pairwise.comparison html pairwise.filter html plot.pairwise.comparison html plot.qc.stats html qc html qc.affy html qc.get.alpha1 html qc.get.array html qc.get.probes html qc.get.ratios html qc.get.spikes html qc.have.params html qc.ok html qc.read.file html qc.stats html read.affy html read.affy.mixed html setQCEnvironment html simpleaffy-deprecated html standard.pearson html trad.scatter.plot html ** building package indices ** installing vignettes ** testing if installed package can be loaded In R CMD INSTALL install for x64 * installing *source* package 'simpleaffy' ... ** libs C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c simpleaffy.c -o simpleaffy.o simpleaffy.c: In function 'bgmas': simpleaffy.c:440:30: warning: passing argument 1 of 'REprintf' from incompatible pointer type if(gn >= ngrid) REprintf(stderr,"Really ouch! %d %d\n",gn,ends[gn]); ^ In file included from C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include/R.h:88:0, from simpleaffy.c:5: C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include/R_ext/Print.h:43:6: note: expected 'const char *' but argument is of type 'struct FILE *' void REprintf(const char *, ...); ^ C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o simpleaffy.dll tmp.def simpleaffy.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/simpleaffy.buildbin-libdir/simpleaffy/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'simpleaffy' as simpleaffy_2.56.0.zip * DONE (simpleaffy) In R CMD INSTALL In R CMD INSTALL