Back to Multiple platform build/check report for BioC 3.7 |
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This page was generated on 2018-10-17 08:27:58 -0400 (Wed, 17 Oct 2018).
Package 1356/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
sevenbridges 1.10.5 Nan Xiao
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | [ OK ] | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: sevenbridges |
Version: 1.10.5 |
Command: /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD check --install=check:sevenbridges.install-out.txt --library=/home/biocbuild/bbs-3.7-bioc/R/library --no-vignettes --timings sevenbridges_1.10.5.tar.gz |
StartedAt: 2018-10-16 03:42:57 -0400 (Tue, 16 Oct 2018) |
EndedAt: 2018-10-16 03:45:11 -0400 (Tue, 16 Oct 2018) |
EllapsedTime: 133.7 seconds |
RetCode: 0 |
Status: OK |
CheckDir: sevenbridges.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD check --install=check:sevenbridges.install-out.txt --library=/home/biocbuild/bbs-3.7-bioc/R/library --no-vignettes --timings sevenbridges_1.10.5.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.7-bioc/meat/sevenbridges.Rcheck’ * using R version 3.5.1 Patched (2018-07-12 r74967) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘sevenbridges/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘sevenbridges’ version ‘1.10.5’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘sevenbridges’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU or elapsed time > 5s user system elapsed Flow 42.072 0.048 42.151 Tool-class 11.196 0.000 11.311 link_what 7.424 0.004 7.430 link 6.396 0.004 6.409 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
sevenbridges.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD INSTALL sevenbridges ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.7-bioc/R/library’ * installing *source* package ‘sevenbridges’ ... ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (sevenbridges)
sevenbridges.Rcheck/tests/testthat.Rout
R version 3.5.1 Patched (2018-07-12 r74967) -- "Feather Spray" Copyright (C) 2018 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library("testthat") > library("sevenbridges") > test_check("sevenbridges") ══ testthat results ═══════════════════════════════════════════════════════════ OK: 0 SKIPPED: 0 FAILED: 0 > > proc.time() user system elapsed 2.136 0.080 2.208
sevenbridges.Rcheck/sevenbridges-Ex.timings
name | user | system | elapsed | |
App-class | 0.000 | 0.000 | 0.001 | |
Auth-class | 0.004 | 0.004 | 0.008 | |
Binding | 0.036 | 0.000 | 0.037 | |
CCBList | 0.064 | 0.000 | 0.064 | |
CWL | 0.004 | 0.000 | 0.002 | |
CommandInputParameter-class | 0.024 | 0.000 | 0.023 | |
CommandInputSchema-class | 0.016 | 0.000 | 0.017 | |
CommandLineBinding-class | 0.000 | 0.004 | 0.006 | |
CommandLineTool | 0.016 | 0.000 | 0.013 | |
CommandOutputBinding-class | 0.008 | 0.000 | 0.007 | |
CommandOutputParameter-class | 0.164 | 0.000 | 0.163 | |
CommandOutputSchema-class | 0.012 | 0.000 | 0.011 | |
DSCList | 0.012 | 0.000 | 0.014 | |
Enum | 0.020 | 0.000 | 0.022 | |
Expression-class | 0.008 | 0.000 | 0.007 | |
ExpressionTool-class | 0.016 | 0.000 | 0.015 | |
File-class | 0.052 | 0.000 | 0.052 | |
Files-class | 0.004 | 0.000 | 0.006 | |
Flow | 42.072 | 0.048 | 42.151 | |
Folders-class | 0.004 | 0.000 | 0.005 | |
Metadata | 0.072 | 0.000 | 0.074 | |
Parameter | 0.028 | 0.000 | 0.029 | |
Process | 0.040 | 0.000 | 0.039 | |
ProcessRequirement | 0.040 | 0.004 | 0.044 | |
Schema | 0.012 | 0.000 | 0.013 | |
TaskHook | 0.000 | 0.000 | 0.002 | |
Tool-class | 11.196 | 0.000 | 11.311 | |
ToolUI | 0.000 | 0.000 | 0.001 | |
Workflow | 0.032 | 0.000 | 0.032 | |
WorkflowStep | 0.004 | 0.000 | 0.005 | |
addIdNum | 0.000 | 0.000 | 0.001 | |
api | 0 | 0 | 0 | |
as-methods | 0.056 | 0.000 | 0.058 | |
batch | 0.000 | 0.000 | 0.001 | |
cli_list_projects | 0 | 0 | 0 | |
cli_list_tags | 0.004 | 0.000 | 0.001 | |
cli_upload | 0 | 0 | 0 | |
convert_app | 4.836 | 0.000 | 4.838 | |
cwl-utils | 0.096 | 0.000 | 0.107 | |
delete-methods | 0.000 | 0.000 | 0.001 | |
download-methods | 0 | 0 | 0 | |
get_token | 0 | 0 | 0 | |
get_uploader | 0.000 | 0.000 | 0.001 | |
input_output_matrix | 0.096 | 0.000 | 0.094 | |
link | 6.396 | 0.004 | 6.409 | |
link_what | 7.424 | 0.004 | 7.430 | |
project_details | 0.000 | 0.000 | 0.001 | |
project_members | 0 | 0 | 0 | |
requirements | 0.040 | 0.000 | 0.039 | |
response-methods | 0 | 0 | 0 | |
sbg_get_env | 0 | 0 | 0 | |
sbg_set_env | 0.000 | 0.000 | 0.001 | |
set_test_env | 0.000 | 0.000 | 0.001 | |
shorthand-cwl | 0.020 | 0.000 | 0.019 | |
tag-methods | 0 | 0 | 0 | |
test_tool_bunny | 0 | 0 | 0 | |
test_tool_cwlrun | 0.000 | 0.000 | 0.001 | |
test_tool_rabix | 0.000 | 0.000 | 0.001 | |
upload_complete_all | 0.004 | 0.000 | 0.001 | |
upload_complete_part | 0 | 0 | 0 | |
upload_delete | 0 | 0 | 0 | |
upload_info | 0 | 0 | 0 | |
upload_info_part | 0.000 | 0.000 | 0.001 | |
upload_init | 0.000 | 0.000 | 0.001 | |