Package: scfind

Version: 1.2.0

Command: rm -rf scfind.buildbin-libdir && mkdir scfind.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh scfind_1.2.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R scfind.buildbin-libdir

StartedAt: 2018-10-17 02:06:31 -0400 (Wed, 17 Oct 2018)

EndedAt: 2018-10-17 02:07:09 -0400 (Wed, 17 Oct 2018)

EllapsedTime: 38.2 seconds

RetCode: 0

Status:  OK

PackageFile: scfind_1.2.0.tgz

PackageFileSize: 2.953 MiB

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf scfind.buildbin-libdir && mkdir scfind.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh scfind_1.2.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R scfind.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=scfind.buildbin-libdir scfind_1.2.0.tar.gz'
>>>>>>> 

* installing *source* package ‘scfind’ ...
** libs
clang++  -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I/usr/local/include   -fPIC  -Wall -g -O2  -c RcppExports.cpp -o RcppExports.o
clang++  -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I/usr/local/include   -fPIC  -Wall -g -O2  -c eliasFano.cpp -o eliasFano.o
eliasFano.cpp:8:9: warning: unused variable 'rem' [-Wunused-variable]
    int rem;
        ^
1 warning generated.
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o scfind.so RcppExports.o eliasFano.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.7-bioc/meat/scfind.buildbin-libdir/scfind/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (scfind)


>>>>>>> 
>>>>>>> FIXING LINKS FOR scfind.buildbin-libdir/scfind/libs//scfind.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgcc_s.1.dylib" "scfind.buildbin-libdir/scfind/libs//scfind.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgfortran.3.dylib" "scfind.buildbin-libdir/scfind/libs//scfind.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libreadline.5.2.dylib" "scfind.buildbin-libdir/scfind/libs//scfind.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libreadline.dylib" "scfind.buildbin-libdir/scfind/libs//scfind.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libquadmath.0.dylib" "scfind.buildbin-libdir/scfind/libs//scfind.so"
install_name_tool -change "/usr/local/gfortran/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgfortran.3.dylib" "scfind.buildbin-libdir/scfind/libs//scfind.so"
install_name_tool -change "/usr/local/gfortran/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libquadmath.0.dylib" "scfind.buildbin-libdir/scfind/libs//scfind.so"