| Back to Multiple platform build/check report for BioC 3.7 |
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This page was generated on 2018-10-17 08:39:26 -0400 (Wed, 17 Oct 2018).
| Package 1066/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| paxtoolsr 1.14.0 Augustin Luna
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | ERROR | skipped | |||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | ERROR | skipped | skipped | |||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | ERROR | skipped | skipped |
| Package: paxtoolsr |
| Version: 1.14.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/paxtoolsr_1.14.0.tar.gz && rm -rf paxtoolsr.buildbin-libdir && mkdir paxtoolsr.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=paxtoolsr.buildbin-libdir paxtoolsr_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL paxtoolsr_1.14.0.zip && rm paxtoolsr_1.14.0.tar.gz paxtoolsr_1.14.0.zip |
| StartedAt: 2018-10-16 18:51:58 -0400 (Tue, 16 Oct 2018) |
| EndedAt: 2018-10-16 18:53:20 -0400 (Tue, 16 Oct 2018) |
| EllapsedTime: 82.0 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/paxtoolsr_1.14.0.tar.gz && rm -rf paxtoolsr.buildbin-libdir && mkdir paxtoolsr.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=paxtoolsr.buildbin-libdir paxtoolsr_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL paxtoolsr_1.14.0.zip && rm paxtoolsr_1.14.0.tar.gz paxtoolsr_1.14.0.zip
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100 23.0M 100 23.0M 0 0 75.9M 0 --:--:-- --:--:-- --:--:-- 77.8M
install for i386
* installing *source* package 'paxtoolsr' ...
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'paxtoolsr'
finding HTML links ... done
addAttributeList html
convertSifToSpia html
convertSifnxIds html
convertToDF html
convertToDT html
downloadFile html
downloadPc2 html
downloadSignedPC html
extractIds html
fetch html
filterSif html
getCacheFiles html
getErrorMessage html
getNeighbors html
getPc html
getPcUrl html
getShortestPathSif html
getSifInteractionCategories html
graphPc html
integrateBiopax html
loadSifInIgraph html
mapValues html
mergeBiopax html
pcDirections html
pcFormats html
pcGraphQueries html
processPcRequest html
readBiopax html
readGmt html
readSbgn html
readSif html
readSifnx html
searchListOfVectors html
searchPc html
skip_on_bioc html
splitSifnxByPathway html
summarize html
summarizeSif html
toGSEA html
toLevel3 html
toSBGN html
toSif html
toSifnx html
topPathways html
traverse html
validate html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'paxtoolsr' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'paxtoolsr' as paxtoolsr_1.14.0.zip
* DONE (paxtoolsr)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'paxtoolsr' successfully unpacked and MD5 sums checked
In R CMD INSTALL