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BUILD report for msa on tokay2

This page was generated on 2018-10-17 08:40:32 -0400 (Wed, 17 Oct 2018).

Package 948/1561HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
msa 1.12.0
Ulrich Bodenhofer
Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018)
URL: https://git.bioconductor.org/packages/msa
Branch: RELEASE_3_7
Last Commit: 5c9af26
Last Changed Date: 2018-04-30 10:35:37 -0400 (Mon, 30 Apr 2018)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK [ OK ] OK  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: msa
Version: 1.12.0
Command: chmod a+r msa -R && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data msa
StartedAt: 2018-10-16 22:43:53 -0400 (Tue, 16 Oct 2018)
EndedAt: 2018-10-16 22:52:03 -0400 (Tue, 16 Oct 2018)
EllapsedTime: 490.0 seconds
RetCode: 0
Status:  OK  
PackageFile: msa_1.12.0.tar.gz
PackageFileSize: 3.603 MiB

Command output

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### Running command:
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###   chmod a+r msa -R && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data msa
###
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* checking for file 'msa/DESCRIPTION' ... OK
* preparing 'msa':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running 'cleanup.win'
* installing the package to build vignettes
* creating vignettes ... OK
* cleaning src
* running 'cleanup.win'
* checking for LF line-endings in source and make files and shell scripts
* checking for empty or unneeded directories
* building 'msa_1.12.0.tar.gz'
Warning: file 'msa/cleanup' did not have execute permissions: corrected
Warning: file 'msa/src/ClustalOmega/configure' did not have execute permissions: corrected
Warning: file 'msa/src/ClustalW/configure' did not have execute permissions: corrected
Warning: file 'msa/src/gc-7.2/configure' did not have execute permissions: corrected
Warning: file 'msa/src/gc-7.2/libatomic_ops/configure' did not have execute permissions: corrected