Back to Multiple platform build/check report for BioC 3.7 |
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This page was generated on 2018-10-17 08:41:03 -0400 (Wed, 17 Oct 2018).
Package 938/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
motifbreakR 1.10.0 Simon Gert Coetzee
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ WARNINGS ] | OK | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: motifbreakR |
Version: 1.10.0 |
Command: C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:motifbreakR.install-out.txt --library=C:\Users\biocbuild\bbs-3.7-bioc\R\library --no-vignettes --timings motifbreakR_1.10.0.tar.gz |
StartedAt: 2018-10-17 03:28:27 -0400 (Wed, 17 Oct 2018) |
EndedAt: 2018-10-17 03:39:31 -0400 (Wed, 17 Oct 2018) |
EllapsedTime: 663.8 seconds |
RetCode: 0 |
Status: WARNINGS |
CheckDir: motifbreakR.Rcheck |
Warnings: 1 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:motifbreakR.install-out.txt --library=C:\Users\biocbuild\bbs-3.7-bioc\R\library --no-vignettes --timings motifbreakR_1.10.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.7-bioc/meat/motifbreakR.Rcheck' * using R version 3.5.1 Patched (2018-07-24 r75005) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'motifbreakR/DESCRIPTION' ... OK * this is package 'motifbreakR' version '1.10.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'motifbreakR' can be installed ... WARNING Found the following significant warnings: Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpSOiz6f/R.INSTALL1cb4121d7508/motifbreakR/man/example.results.Rd:7: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpSOiz6f/R.INSTALL1cb4121d7508/motifbreakR/man/example.results.Rd:12: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic Warning: replacing previous import 'IRanges::windows' by 'grDevices::windows' when loading 'motifbreakR' See 'C:/Users/biocbuild/bbs-3.7-bioc/meat/motifbreakR.Rcheck/00install.out' for details. * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE Packages in Depends field not imported from: 'MotifDb' 'grid' These packages need to be imported from (in the NAMESPACE file) for when this namespace is loaded but not attached. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE plotMotifLogoStack.2: no visible global function definition for 'par' snps.from.file: no visible global function definition for 'info' snps.from.file: no visible global function definition for 'rowRanges' snps.from.rsid: no visible global function definition for 'snpsById' Undefined global functions or variables: info par rowRanges snpsById Consider adding importFrom("graphics", "par") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK Examples with CPU or elapsed time > 5s user system elapsed snps.from.rsid 62.47 1.69 73.20 motifbreakR 7.15 0.54 8.45 snps.from.file 0.75 0.03 5.94 ** running examples for arch 'x64' ... OK Examples with CPU or elapsed time > 5s user system elapsed snps.from.rsid 62.69 1.53 64.22 motifbreakR 7.55 0.20 7.75 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 WARNING, 2 NOTEs See 'C:/Users/biocbuild/bbs-3.7-bioc/meat/motifbreakR.Rcheck/00check.log' for details.
motifbreakR.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/motifbreakR_1.10.0.tar.gz && rm -rf motifbreakR.buildbin-libdir && mkdir motifbreakR.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=motifbreakR.buildbin-libdir motifbreakR_1.10.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL motifbreakR_1.10.0.zip && rm motifbreakR_1.10.0.tar.gz motifbreakR_1.10.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 1355k 100 1355k 0 0 13.9M 0 --:--:-- --:--:-- --:--:-- 15.0M install for i386 * installing *source* package 'motifbreakR' ... ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading See system.file("LICENSE", package="MotifDb") for use restrictions. Warning: replacing previous import 'IRanges::windows' by 'grDevices::windows' when loading 'motifbreakR' ** help *** installing help indices converting help for package 'motifbreakR' finding HTML links ... done calculatePvalue html finding level-2 HTML links ... done encodemotif html example.results html Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpSOiz6f/R.INSTALL1cb4121d7508/motifbreakR/man/example.results.Rd:7: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpSOiz6f/R.INSTALL1cb4121d7508/motifbreakR/man/example.results.Rd:12: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic factorbook html hocomoco html homer html motifbreakR html motifbreakR_motif html plotMB html snps.from.file html snps.from.rsid html ** building package indices ** installing vignettes ** testing if installed package can be loaded See system.file("LICENSE", package="MotifDb") for use restrictions. Warning: replacing previous import 'IRanges::windows' by 'grDevices::windows' when loading 'motifbreakR' In R CMD INSTALL install for x64 * installing *source* package 'motifbreakR' ... ** testing if installed package can be loaded See system.file("LICENSE", package="MotifDb") for use restrictions. Warning: replacing previous import 'IRanges::windows' by 'grDevices::windows' when loading 'motifbreakR' * MD5 sums packaged installation of 'motifbreakR' as motifbreakR_1.10.0.zip * DONE (motifbreakR) In R CMD INSTALL In R CMD INSTALL * installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library' package 'motifbreakR' successfully unpacked and MD5 sums checked In R CMD INSTALL
motifbreakR.Rcheck/examples_i386/motifbreakR-Ex.timings
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motifbreakR.Rcheck/examples_x64/motifbreakR-Ex.timings
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