Pan Du
| Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018) |
| URL: https://git.bioconductor.org/packages/methyAnalysis |
| Branch: RELEASE_3_7 |
| Last Commit: cfd8b2e |
| Last Changed Date: 2018-04-30 10:35:26 -0400 (Mon, 30 Apr 2018) |
| Back to Multiple platform build/check report for BioC 3.7 |
|
This page was generated on 2018-10-17 08:36:30 -0400 (Wed, 17 Oct 2018).
| Package 886/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| methyAnalysis 1.22.0 Pan Du
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ WARNINGS ] | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | |
| Package: methyAnalysis |
| Version: 1.22.0 |
| Command: C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:methyAnalysis.install-out.txt --library=C:\Users\biocbuild\bbs-3.7-bioc\R\library --no-vignettes --timings methyAnalysis_1.22.0.tar.gz |
| StartedAt: 2018-10-17 03:14:54 -0400 (Wed, 17 Oct 2018) |
| EndedAt: 2018-10-17 03:32:10 -0400 (Wed, 17 Oct 2018) |
| EllapsedTime: 1036.3 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: methyAnalysis.Rcheck |
| Warnings: 3 |
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### Running command:
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### C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:methyAnalysis.install-out.txt --library=C:\Users\biocbuild\bbs-3.7-bioc\R\library --no-vignettes --timings methyAnalysis_1.22.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.7-bioc/meat/methyAnalysis.Rcheck'
* using R version 3.5.1 Patched (2018-07-24 r75005)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'methyAnalysis/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'methyAnalysis' version '1.22.0'
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Depends: includes the non-default packages:
'grid' 'BiocGenerics' 'IRanges' 'GenomeInfoDb' 'GenomicRanges'
'Biobase' 'org.Hs.eg.db'
Adding so many packages to the search path is excessive and importing
selectively is preferable.
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'methyAnalysis' can be installed ... WARNING
Found the following significant warnings:
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOQG2PR/R.INSTALL18d46e407ce8/methyAnalysis/man/MethyGenoSet-class.Rd:34: file link 'GenoSet' in package 'genoset' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOQG2PR/R.INSTALL18d46e407ce8/methyAnalysis/man/MethyGenoSet-class.Rd:36: file link 'GenoSet' in package 'genoset' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOQG2PR/R.INSTALL18d46e407ce8/methyAnalysis/man/MethyGenoSet-class.Rd:46: file link 'GenoSet' in package 'genoset' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOQG2PR/R.INSTALL18d46e407ce8/methyAnalysis/man/MethyGenoSet-class.Rd:51: file link 'SummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOQG2PR/R.INSTALL18d46e407ce8/methyAnalysis/man/MethyGenoSet-class.Rd:57: file link 'SummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOQG2PR/R.INSTALL18d46e407ce8/methyAnalysis/man/MethyGenoSet-class.Rd:58: file link 'colData' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOQG2PR/R.INSTALL18d46e407ce8/methyAnalysis/man/MethyGenoSet-class.Rd:86: file link 'GenoSet' in package 'genoset' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOQG2PR/R.INSTALL18d46e407ce8/methyAnalysis/man/MethyGenoSet-class.Rd:91: file link 'SummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOQG2PR/R.INSTALL18d46e407ce8/methyAnalysis/man/MethyGenoSet-class.Rd:92: file link 'GenoSet' in package 'genoset' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOQG2PR/R.INSTALL18d46e407ce8/methyAnalysis/man/MethyGenoSet-class.Rd:92: file link 'SummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOQG2PR/R.INSTALL18d46e407ce8/methyAnalysis/man/MethyGenoSet-class.Rd:100: file link 'GenoSet' in package 'genoset' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOQG2PR/R.INSTALL18d46e407ce8/methyAnalysis/man/MethyGenoSet-class.Rd:100: file link 'SummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOQG2PR/R.INSTALL18d46e407ce8/methyAnalysis/man/asBigMatrix-methods.Rd:15: file link 'GenoSet' in package 'genoset' does not exist and so has been treated as a topic
See 'C:/Users/biocbuild/bbs-3.7-bioc/meat/methyAnalysis.Rcheck/00install.out' for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Packages listed in more than one of Depends, Imports, Suggests, Enhances:
'IRanges' 'GenomicRanges' 'Biobase'
A package should be listed in only one of these fields.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... WARNING
'::' or ':::' import not declared from: 'bigmemoryExtras'
Packages in Depends field not imported from:
'grid' 'org.Hs.eg.db'
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
Missing or unexported object: 'GenomicRanges::overlapsAny'
Unexported objects imported by ':::' calls:
'Gviz:::.parMappings' 'Gviz:::.setupTextSize' 'Gviz:::.z2icol'
'Gviz:::setStacks'
See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... WARNING
'assayElement<-' '\S4method{assayElement<-}{SummarizedExperiment}'
The argument of a replacement function which corresponds to the right
hand side must be named 'value'.
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
.estimateTrackHeight: no visible global function definition for
'convertY'
.estimateTrackHeight: no visible global function definition for 'unit'
.identifySigProbe: no visible global function definition for 'rowMax'
MethyLumiM2GenoSet: no visible global function definition for 'fData'
MethyLumiM2GenoSet: no visible global function definition for
'metadata'
MethyLumiM2GenoSet: no visible global function definition for 'mcols<-'
annotateDMRInfo: no visible global function definition for
'elementNROWS'
annotateDMRInfo: no visible global function definition for 'values'
annotateGRanges: no visible global function definition for
'elementNROWS'
annotateGRanges: no visible global function definition for 'values'
annotateGRanges: no visible global function definition for 'resize'
annotateGRanges: no visible global function definition for 'values<-'
annotateGRanges: no visible global function definition for 'flank'
annotateGRanges: no visible global function definition for 'nearest'
annotateGRanges: no visible global function definition for
'findOverlaps'
annotateGRanges: no visible global function definition for 'queryHits'
annotateGRanges: no visible global function definition for
'subjectHits'
buildAnnotationTracks: no visible global function definition for
'values<-'
buildAnnotationTracks: no visible global function definition for
'DataFrame'
buildAnnotationTracks: no visible global function definition for
'values'
checkChrName: no visible global function definition for 'ranges<-'
createTranscriptTrack: no visible global function definition for
'values'
detectDMR.slideWin: no visible global function definition for
'values<-'
estimateCMR.methylation: no visible global function definition for
'findOverlaps'
estimateCMR.methylation: no visible global function definition for
'mcols'
estimateCMR.methylation: no visible global function definition for
'values'
estimateMethySeq: no visible global function definition for 'slice'
estimateMethySeq: no visible global function definition for 'DataFrame'
estimateMethySeq: no visible global function definition for
'findOverlaps'
estimateMethySeq: no visible global function definition for 'values<-'
estimateMethySeq: no visible global function definition for 'values'
filterBisulfiteVariant: no visible global function definition for
'slice'
filterBisulfiteVariant: no visible global function definition for
'findOverlaps'
getContinuousRegion: no visible global function definition for
'values<-'
getContinuousRegion: no visible global function definition for 'values'
getContinuousRegion: no visible global function definition for 'reduce'
getCoverage: no visible global function definition for 'values<-'
getCoverage: no visible global function definition for 'DataFrame'
getCoverage: no visible global function definition for 'values'
getMethyProbeLocation: no visible global function definition for
'features'
getMethyProbeLocation: no visible global function definition for
'values<-'
getMethyProbeLocation: no visible global function definition for
'DataFrame'
getMethyProbeLocation: no visible global function definition for 'keys'
heatmapByChromosome: no visible global function definition for
'pushViewport'
heatmapByChromosome: no visible global function definition for
'viewport'
heatmapByChromosome: no visible global function definition for
'grid.layout'
heatmapByChromosome: no visible global function definition for
'popViewport'
heatmapByChromosome: no visible global function definition for
'convertX'
heatmapByChromosome: no visible global function definition for 'unit'
heatmapByChromosome: no visible global function definition for
'convertY'
heatmapByChromosome: no visible global function definition for
'grid.rect'
heatmapByChromosome: no visible global function definition for 'gpar'
heatmapByChromosome: no visible global function definition for
'grid.lines'
identifyCpG: no visible global function definition for 'matchPattern'
identifySigDMR: no visible global function definition for 'values'
identifySigDMR: no visible global function definition for 'values<-'
identifySigDMR: no visible global function definition for
'subsetByOverlaps'
plotHeatmapByGene: no visible global function definition for
'grid.newpage'
plotHeatmapByGene: no visible global function definition for
'pushViewport'
plotHeatmapByGene: no visible global function definition for 'viewport'
plotHeatmapByGene: no visible global function definition for
'grid.layout'
plotHeatmapByGene: no visible global function definition for
'popViewport'
plotHeatmapByGene: no visible global function definition for
'grid.rect'
plotHeatmapByGene: no visible global function definition for 'gpar'
plotHeatmapByGene: no visible global function definition for
'grid.segments'
plotHeatmapByGene: no visible global function definition for 'convertX'
plotHeatmapByGene: no visible global function definition for 'unit'
plotHeatmapByGene: no visible global function definition for
'grid.text'
plotHeatmapByGene: no visible global function definition for 'convertY'
plotMethylationHeatmapByGene : <anonymous>: no visible global function
definition for 'grid.newpage'
plotMethylationHeatmapByGene : <anonymous>: no visible global function
definition for 'pushViewport'
plotMethylationHeatmapByGene : <anonymous>: no visible global function
definition for 'viewport'
plotMethylationHeatmapByGene : <anonymous>: no visible global function
definition for 'grid.layout'
plotMethylationHeatmapByGene : <anonymous>: no visible global function
definition for 'popViewport'
plotMethylationHeatmapByGene : <anonymous>: no visible global function
definition for 'grid.rect'
plotMethylationHeatmapByGene : <anonymous>: no visible global function
definition for 'gpar'
plotMethylationHeatmapByGene : <anonymous>: no visible global function
definition for 'grid.segments'
plotMethylationHeatmapByGene : <anonymous>: no visible global function
definition for 'convertX'
plotMethylationHeatmapByGene : <anonymous>: no visible global function
definition for 'unit'
plotMethylationHeatmapByGene : <anonymous>: no visible global function
definition for 'grid.text'
plotMethylationHeatmapByGene : <anonymous>: no visible global function
definition for 'convertY'
plotTracksWithDataTrackInfo : <anonymous>: no visible global function
definition for 'values'
plotTracksWithDataTrackInfo: no visible global function definition for
'grid.newpage'
plotTracksWithDataTrackInfo: no visible global function definition for
'pushViewport'
plotTracksWithDataTrackInfo: no visible global function definition for
'viewport'
plotTracksWithDataTrackInfo: no visible global function definition for
'grid.layout'
plotTracksWithDataTrackInfo: no visible global function definition for
'convertX'
plotTracksWithDataTrackInfo: no visible global function definition for
'unit'
plotTracksWithDataTrackInfo : <anonymous>: no visible global function
definition for 'convertX'
plotTracksWithDataTrackInfo : <anonymous>: no visible global function
definition for 'unit'
plotTracksWithDataTrackInfo: no visible global function definition for
'popViewport'
plotTracksWithDataTrackInfo: no visible global function definition for
'convertY'
plotTracksWithDataTrackInfo: no visible global function definition for
'grid.text'
plotTracksWithDataTrackInfo: no visible global function definition for
'gpar'
plotTracksWithDataTrackInfo: no visible global function definition for
'grid.rect'
transcriptDb2GeneRegionTrackByGene: no visible global function
definition for 'values'
updateMethyGenoSet: no visible global function definition for 'mcols<-'
coerce,MethyGenoSet-MethyLumiM: no visible global function definition
for 'mcols'
coerce,MethyGenoSet-MethyLumiM: no visible global function definition
for 'fData<-'
Undefined global functions or variables:
DataFrame convertX convertY elementNROWS fData fData<- features
findOverlaps flank gpar grid.layout grid.lines grid.newpage grid.rect
grid.segments grid.text keys matchPattern mcols mcols<- metadata
nearest popViewport pushViewport queryHits ranges<- reduce resize
rowMax slice subjectHits subsetByOverlaps unit values values<-
viewport
* checking Rd files ... NOTE
prepare_Rd: estimateCMR.methylation.Rd:35-36: Dropping empty section \details
prepare_Rd: estimateCMR.methylation.Rd:45-47: Dropping empty section \examples
prepare_Rd: estimateMethySeq.Rd:33-35: Dropping empty section \details
prepare_Rd: estimateMethySeq.Rd:44-46: Dropping empty section \seealso
prepare_Rd: estimateMethySeq.Rd:47-49: Dropping empty section \examples
prepare_Rd: filterBisulfiteVariant.Rd:51-52: Dropping empty section \examples
prepare_Rd: getCoverage.Rd:35-36: Dropping empty section \examples
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Package unavailable to check Rd xrefs: 'bigmemoryExtras'
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
plotMethylationHeatmapByGene 38.84 0.37 78.80
heatmapByChromosome 23.50 0.30 24.24
plotHeatmapByGene 22.34 0.25 38.75
MethyLumiM2GenoSet 17.86 3.11 50.47
buildAnnotationTracks 16.64 0.92 44.44
createTranscriptTrack 15.40 0.22 15.63
plotTracksWithDataTrackInfo 15.29 0.16 15.65
annotateDMRInfo 8.02 1.37 9.39
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
plotMethylationHeatmapByGene 35.42 0.33 63.94
heatmapByChromosome 18.75 0.26 19.21
MethyLumiM2GenoSet 17.23 0.57 17.80
plotHeatmapByGene 16.54 0.26 30.56
buildAnnotationTracks 16.14 0.48 45.88
plotTracksWithDataTrackInfo 14.34 0.17 14.73
createTranscriptTrack 12.86 0.20 13.06
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 3 WARNINGs, 5 NOTEs
See
'C:/Users/biocbuild/bbs-3.7-bioc/meat/methyAnalysis.Rcheck/00check.log'
for details.
methyAnalysis.Rcheck/00install.out
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### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/methyAnalysis_1.22.0.tar.gz && rm -rf methyAnalysis.buildbin-libdir && mkdir methyAnalysis.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=methyAnalysis.buildbin-libdir methyAnalysis_1.22.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL methyAnalysis_1.22.0.zip && rm methyAnalysis_1.22.0.tar.gz methyAnalysis_1.22.0.zip
###
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install for i386
* installing *source* package 'methyAnalysis' ...
** R
** data
** inst
** byte-compile and prepare package for lazy loading
No methods found in package 'genoset' for request: 'toGenomeOrder' when loading 'methyAnalysis'
** help
*** installing help indices
converting help for package 'methyAnalysis'
finding HTML links ... done
MethyGenoSet-class html
finding level-2 HTML links ... done
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOQG2PR/R.INSTALL18d46e407ce8/methyAnalysis/man/MethyGenoSet-class.Rd:34: file link 'GenoSet' in package 'genoset' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOQG2PR/R.INSTALL18d46e407ce8/methyAnalysis/man/MethyGenoSet-class.Rd:36: file link 'GenoSet' in package 'genoset' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOQG2PR/R.INSTALL18d46e407ce8/methyAnalysis/man/MethyGenoSet-class.Rd:46: file link 'GenoSet' in package 'genoset' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOQG2PR/R.INSTALL18d46e407ce8/methyAnalysis/man/MethyGenoSet-class.Rd:51: file link 'SummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOQG2PR/R.INSTALL18d46e407ce8/methyAnalysis/man/MethyGenoSet-class.Rd:57: file link 'SummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOQG2PR/R.INSTALL18d46e407ce8/methyAnalysis/man/MethyGenoSet-class.Rd:58: file link 'colData' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOQG2PR/R.INSTALL18d46e407ce8/methyAnalysis/man/MethyGenoSet-class.Rd:86: file link 'GenoSet' in package 'genoset' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOQG2PR/R.INSTALL18d46e407ce8/methyAnalysis/man/MethyGenoSet-class.Rd:91: file link 'SummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOQG2PR/R.INSTALL18d46e407ce8/methyAnalysis/man/MethyGenoSet-class.Rd:92: file link 'GenoSet' in package 'genoset' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOQG2PR/R.INSTALL18d46e407ce8/methyAnalysis/man/MethyGenoSet-class.Rd:92: file link 'SummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOQG2PR/R.INSTALL18d46e407ce8/methyAnalysis/man/MethyGenoSet-class.Rd:100: file link 'GenoSet' in package 'genoset' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOQG2PR/R.INSTALL18d46e407ce8/methyAnalysis/man/MethyGenoSet-class.Rd:100: file link 'SummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
MethyLumiM2GenoSet html
annotateDMRInfo html
annotateGRanges html
asBigMatrix-methods html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOQG2PR/R.INSTALL18d46e407ce8/methyAnalysis/man/asBigMatrix-methods.Rd:15: file link 'GenoSet' in package 'genoset' does not exist and so has been treated as a topic
buildAnnotationTracks html
checkChrName html
createTranscriptTrack html
detectDMR.slideWin html
estimateCMR.methylation html
estimateMethySeq html
exampleMethyGenoSet html
export.DMRInfo html
export.methyGenoSet html
filterBisulfiteVariant html
getContinuousRegion html
getCoverage html
heatmapByChromosome html
identifyCpG html
identifySigDMR html
plotHeatmapByGene html
plotMethylationHeatmapByGene html
plotTracksWithDataTrackInfo html
smoothMethyData html
updateMethyGenoSet html
** building package indices
** installing vignettes
** testing if installed package can be loaded
No methods found in package 'genoset' for request: 'toGenomeOrder' when loading 'methyAnalysis'
In R CMD INSTALL
install for x64
* installing *source* package 'methyAnalysis' ...
** testing if installed package can be loaded
No methods found in package 'genoset' for request: 'toGenomeOrder' when loading 'methyAnalysis'
* MD5 sums
packaged installation of 'methyAnalysis' as methyAnalysis_1.22.0.zip
* DONE (methyAnalysis)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'methyAnalysis' successfully unpacked and MD5 sums checked
In R CMD INSTALL
|
methyAnalysis.Rcheck/examples_i386/methyAnalysis-Ex.timings
|
methyAnalysis.Rcheck/examples_x64/methyAnalysis-Ex.timings
|