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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/iClusterPlus_1.16.0.tar.gz && rm -rf iClusterPlus.buildbin-libdir && mkdir iClusterPlus.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=iClusterPlus.buildbin-libdir iClusterPlus_1.16.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL iClusterPlus_1.16.0.zip && rm iClusterPlus_1.16.0.tar.gz iClusterPlus_1.16.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 20.2M 100 20.2M 0 0 85.4M 0 --:--:-- --:--:-- --:--:-- 87.4M
install for i386
* installing *source* package 'iClusterPlus' ...
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
** libs
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c iClusterBayes.c -o iClusterBayes.o
iClusterBayes.c: In function 'bvsPoisson':
iClusterBayes.c:380:27: warning: variable 'k1k1' set but not used [-Wunused-but-set-variable]
int *gamma_p,i,j,nk1,k1,k1k1,incx,incy,ID,np;
^
iClusterBayes.c: In function 'bvsBinom':
iClusterBayes.c:629:27: warning: variable 'k1k1' set but not used [-Wunused-but-set-variable]
int *gamma_p,i,j,nk1,k1,k1k1,incx,incy,ID,np;
^
iClusterBayes.c: In function 'mcmcBayes':
iClusterBayes.c:1214:28: warning: variable 'Zdraw' set but not used [-Wunused-but-set-variable]
int i,j,h,n,k,ID,Zburnin,Zdraw,ndt,nk,thin,nthin,remainder,ty0,p0,ty1,p1,ty2,p2,ty3,p3,ty4,p4,ty5,p5,betaBurnin,betaDraw,p0k,p1k,p2k,p3k,p4k,p5k;
^
iClusterBayes.c:1214:20: warning: variable 'Zburnin' set but not used [-Wunused-but-set-variable]
int i,j,h,n,k,ID,Zburnin,Zdraw,ndt,nk,thin,nthin,remainder,ty0,p0,ty1,p1,ty2,p2,ty3,p3,ty4,p4,ty5,p5,betaBurnin,betaDraw,p0k,p1k,p2k,p3k,p4k,p5k;
^
iClusterBayes.c:1216:174: warning: 'gb3' may be used uninitialized in this function [-Wmaybe-uninitialized]
double *sumMeanZ,*suma0,*sumb0,*suma1,*sumb1,*suma2,*sumb2,*suma3,*sumb3,*suma4,*sumb4,*suma5,*sumb5,*sumsig0,*sumsig1,*sumsig2,*sumsig3,*sumsig4,*sumsig5,*gb0,*gb1,*gb2,*gb3,*gb4,*gb5;
^
iClusterBayes.c:1477:5: warning: 'gb2' may be used uninitialized in this function [-Wmaybe-uninitialized]
mcmcMix6d(meanZ,lastZ,nkZbd,sdev,
^
iClusterBayes.c:1477:5: warning: 'gb1' may be used uninitialized in this function [-Wmaybe-uninitialized]
iClusterBayes.c:1477:5: warning: 'gb0' may be used uninitialized in this function [-Wmaybe-uninitialized]
iClusterBayes.c:1216:179: warning: 'gb4' may be used uninitialized in this function [-Wmaybe-uninitialized]
double *sumMeanZ,*suma0,*sumb0,*suma1,*sumb1,*suma2,*sumb2,*suma3,*sumb3,*suma4,*sumb4,*suma5,*sumb5,*sumsig0,*sumsig1,*sumsig2,*sumsig3,*sumsig4,*sumsig5,*gb0,*gb1,*gb2,*gb3,*gb4,*gb5;
^
iClusterBayes.c:1216:184: warning: 'gb5' may be used uninitialized in this function [-Wmaybe-uninitialized]
double *sumMeanZ,*suma0,*sumb0,*suma1,*sumb1,*suma2,*sumb2,*suma3,*sumb3,*suma4,*sumb4,*suma5,*sumb5,*sumsig0,*sumsig1,*sumsig2,*sumsig3,*sumsig4,*sumsig5,*gb0,*gb1,*gb2,*gb3,*gb4,*gb5;
^
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c iClusterPlus.c -o iClusterPlus.o
iClusterPlus.c: In function 'iClusterCore':
iClusterPlus.c:1101:60: warning: unused variable 'tempm3' [-Wunused-variable]
double *btp,*btpb, *EXZt,*tempX,*tempm0,*tempm1,*tempm2,*tempm3,*BOld,*PhivecOld, *XtXdiag;
^
iClusterPlus.c:1099:18: warning: variable 'pp' set but not used [-Wunused-but-set-variable]
int i, j,kk,pk,pp,s,t;
^
C:/Rtools/mingw_32/bin/gfortran -fdefault-real-8 -ffixed-form -O3 -mtune=generic -c newGLMnet.f90 -o newGLMnet.o
C:/Rtools/mingw_32/bin/gfortran -shared -s -static-libgcc -o iClusterPlus.dll tmp.def iClusterBayes.o iClusterPlus.o newGLMnet.o -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/i386 -lRlapack -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/i386 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/iClusterPlus.buildbin-libdir/iClusterPlus/libs/i386
** R
** data
*** moving datasets to lazyload DB
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'iClusterPlus'
finding HTML links ... done
CNregions html
breast.chr17 html
compute.pod html
coord html
gbm html
glp html
iCluster html
iCluster2 html
iClusterBayes html
iClusterPlus html
plotHMBayes html
plotHeatmap html
plotRI html
plotiCluster html
simuResult html
tune.iCluster2 html
tune.iClusterBayes html
tune.iClusterPlus html
utility html
variation.hg18.v10.nov.2010 html
** building package indices
** installing vignettes
'iClusterPlus.Rnw' using 'UTF-8'
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'iClusterPlus' ...
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
** libs
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c iClusterBayes.c -o iClusterBayes.o
iClusterBayes.c: In function 'bvsPoisson':
iClusterBayes.c:380:27: warning: variable 'k1k1' set but not used [-Wunused-but-set-variable]
int *gamma_p,i,j,nk1,k1,k1k1,incx,incy,ID,np;
^
iClusterBayes.c: In function 'bvsBinom':
iClusterBayes.c:629:27: warning: variable 'k1k1' set but not used [-Wunused-but-set-variable]
int *gamma_p,i,j,nk1,k1,k1k1,incx,incy,ID,np;
^
iClusterBayes.c: In function 'mcmcBayes':
iClusterBayes.c:1214:28: warning: variable 'Zdraw' set but not used [-Wunused-but-set-variable]
int i,j,h,n,k,ID,Zburnin,Zdraw,ndt,nk,thin,nthin,remainder,ty0,p0,ty1,p1,ty2,p2,ty3,p3,ty4,p4,ty5,p5,betaBurnin,betaDraw,p0k,p1k,p2k,p3k,p4k,p5k;
^
iClusterBayes.c:1214:20: warning: variable 'Zburnin' set but not used [-Wunused-but-set-variable]
int i,j,h,n,k,ID,Zburnin,Zdraw,ndt,nk,thin,nthin,remainder,ty0,p0,ty1,p1,ty2,p2,ty3,p3,ty4,p4,ty5,p5,betaBurnin,betaDraw,p0k,p1k,p2k,p3k,p4k,p5k;
^
iClusterBayes.c:1216:174: warning: 'gb3' may be used uninitialized in this function [-Wmaybe-uninitialized]
double *sumMeanZ,*suma0,*sumb0,*suma1,*sumb1,*suma2,*sumb2,*suma3,*sumb3,*suma4,*sumb4,*suma5,*sumb5,*sumsig0,*sumsig1,*sumsig2,*sumsig3,*sumsig4,*sumsig5,*gb0,*gb1,*gb2,*gb3,*gb4,*gb5;
^
iClusterBayes.c:1477:5: warning: 'gb2' may be used uninitialized in this function [-Wmaybe-uninitialized]
mcmcMix6d(meanZ,lastZ,nkZbd,sdev,
^
iClusterBayes.c:1477:5: warning: 'gb1' may be used uninitialized in this function [-Wmaybe-uninitialized]
iClusterBayes.c:1477:5: warning: 'gb0' may be used uninitialized in this function [-Wmaybe-uninitialized]
iClusterBayes.c:1216:179: warning: 'gb4' may be used uninitialized in this function [-Wmaybe-uninitialized]
double *sumMeanZ,*suma0,*sumb0,*suma1,*sumb1,*suma2,*sumb2,*suma3,*sumb3,*suma4,*sumb4,*suma5,*sumb5,*sumsig0,*sumsig1,*sumsig2,*sumsig3,*sumsig4,*sumsig5,*gb0,*gb1,*gb2,*gb3,*gb4,*gb5;
^
iClusterBayes.c:1216:184: warning: 'gb5' may be used uninitialized in this function [-Wmaybe-uninitialized]
double *sumMeanZ,*suma0,*sumb0,*suma1,*sumb1,*suma2,*sumb2,*suma3,*sumb3,*suma4,*sumb4,*suma5,*sumb5,*sumsig0,*sumsig1,*sumsig2,*sumsig3,*sumsig4,*sumsig5,*gb0,*gb1,*gb2,*gb3,*gb4,*gb5;
^
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c iClusterPlus.c -o iClusterPlus.o
iClusterPlus.c: In function 'iClusterCore':
iClusterPlus.c:1101:60: warning: unused variable 'tempm3' [-Wunused-variable]
double *btp,*btpb, *EXZt,*tempX,*tempm0,*tempm1,*tempm2,*tempm3,*BOld,*PhivecOld, *XtXdiag;
^
iClusterPlus.c:1099:18: warning: variable 'pp' set but not used [-Wunused-but-set-variable]
int i, j,kk,pk,pp,s,t;
^
C:/Rtools/mingw_64/bin/gfortran -fdefault-real-8 -ffixed-form -O2 -mtune=generic -c newGLMnet.f90 -o newGLMnet.o
C:/Rtools/mingw_64/bin/gfortran -shared -s -static-libgcc -o iClusterPlus.dll tmp.def iClusterBayes.o iClusterPlus.o newGLMnet.o -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/x64 -lRlapack -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/iClusterPlus.buildbin-libdir/iClusterPlus/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'iClusterPlus' as iClusterPlus_1.16.0.zip
* DONE (iClusterPlus)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'iClusterPlus' successfully unpacked and MD5 sums checked
In R CMD INSTALL
