Guangchuang Yu
| Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018) |
| URL: https://git.bioconductor.org/packages/ggtree |
| Branch: RELEASE_3_7 |
| Last Commit: 6e2d3d0 |
| Last Changed Date: 2018-08-07 08:15:35 -0400 (Tue, 07 Aug 2018) |
| Back to Multiple platform build/check report for BioC 3.7 |
|
This page was generated on 2018-10-17 08:39:53 -0400 (Wed, 17 Oct 2018).
| Package 616/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| ggtree 1.12.7 Guangchuang Yu
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: ggtree |
| Version: 1.12.7 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/ggtree_1.12.7.tar.gz && rm -rf ggtree.buildbin-libdir && mkdir ggtree.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ggtree.buildbin-libdir ggtree_1.12.7.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL ggtree_1.12.7.zip && rm ggtree_1.12.7.tar.gz ggtree_1.12.7.zip |
| StartedAt: 2018-10-16 19:07:12 -0400 (Tue, 16 Oct 2018) |
| EndedAt: 2018-10-16 19:08:55 -0400 (Tue, 16 Oct 2018) |
| EllapsedTime: 103.7 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/ggtree_1.12.7.tar.gz && rm -rf ggtree.buildbin-libdir && mkdir ggtree.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ggtree.buildbin-libdir ggtree_1.12.7.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL ggtree_1.12.7.zip && rm ggtree_1.12.7.tar.gz ggtree_1.12.7.zip
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install for i386
* installing *source* package 'ggtree' ...
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'ggtree'
finding HTML links ... done
Date2decimal html
MRCA html
add-TREEDATA html
add_TREEINFO html
add_colorbar html
annotation_image html
applyLayoutDaylight html
as.polytomy html
collapse html
decimal2Date html
dotFun html
expand html
facet_plot html
flip html
geom_aline html
geom_balance html
geom_cladelabel html
geom_cladelabel2 html
geom_hilight html
geom_hilight_encircle html
geom_label2 html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpgtgFfZ/R.INSTALLbb0265a13fc/ggtree/man/geom_label2.Rd:52: file link 'geom_label' in package 'ggplot2' does not exist and so has been treated as a topic
geom_motif html
geom_nodelab html
geom_nodepoint html
geom_point2 html
geom_range html
geom_rootpoint html
geom_segment2 html
geom_strip html
geom_taxalink html
geom_text2 html
geom_tiplab html
geom_tiplab2 html
geom_tippoint html
geom_tree html
geom_tree2 html
geom_treescale html
get.offspring.tip html
get.path html
getChild.df html
getNodeAngle.df html
getNodesBreadthFirst.df html
getParent.df html
getSubtree html
getSubtree.df html
getSubtreeUnrooted html
getSubtreeUnrooted.df html
getTreeArcAngles html
get_balance_position html
get_clade_position html
get_heatmap_column_position html
get_taxa_name html
ggtree-ggproto html
ggtree html
gheatmap html
gzoom-methods html
gzoom.phylo html
identify html
inset html
layoutDaylight html
layoutEqualAngle html
msaplot html
multiplot html
nodebar html
nodeid html
nodepie html
open_tree html
phylopic html
pipe html
range_format html
reexports html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpgtgFfZ/R.INSTALLbb0265a13fc/ggtree/man/reexports.Rd:46: file link 'collapse' in package 'dplyr' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpgtgFfZ/R.INSTALLbb0265a13fc/ggtree/man/reexports.Rd:48: file link 'xlim' in package 'ggplot2' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpgtgFfZ/R.INSTALLbb0265a13fc/ggtree/man/reexports.Rd:48: file link 'geom_label' in package 'ggplot2' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpgtgFfZ/R.INSTALLbb0265a13fc/ggtree/man/reexports.Rd:52: file link 'read.beast' in package 'treeio' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpgtgFfZ/R.INSTALLbb0265a13fc/ggtree/man/reexports.Rd:52: file link 'read.jtree' in package 'treeio' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpgtgFfZ/R.INSTALLbb0265a13fc/ggtree/man/reexports.Rd:52: file link 'read.mrbayes' in package 'treeio' does not exist and so has been treated as a topic
reroot-methods html
rescale_tree html
revts html
rotate html
rotateTreePoints.df html
rotate_tree html
scaleClade html
scale_color-methods html
scale_x_ggtree html
set_hilight_legend html
stat_balance html
stat_hilight html
subview html
theme_inset html
theme_tree html
theme_tree2 html
update-TREE html
viewClade html
xlim_expand html
xlim_tree html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'ggtree' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ggtree' as ggtree_1.12.7.zip
* DONE (ggtree)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'ggtree' successfully unpacked and MD5 sums checked
In R CMD INSTALL