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BUILD BIN report for gaga on tokay2

This page was generated on 2018-10-17 08:33:39 -0400 (Wed, 17 Oct 2018).

Package 537/1561HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
gaga 2.26.0
David Rossell
Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018)
URL: https://git.bioconductor.org/packages/gaga
Branch: RELEASE_3_7
Last Commit: 23dfe46
Last Changed Date: 2018-04-30 10:35:08 -0400 (Mon, 30 Apr 2018)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: gaga
Version: 2.26.0
Command: rm -rf gaga.buildbin-libdir && mkdir gaga.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=gaga.buildbin-libdir gaga_2.26.0.tar.gz
StartedAt: 2018-10-17 06:21:08 -0400 (Wed, 17 Oct 2018)
EndedAt: 2018-10-17 06:21:31 -0400 (Wed, 17 Oct 2018)
EllapsedTime: 23.2 seconds
RetCode: 0
Status:  OK  
PackageFile: gaga_2.26.0.zip
PackageFileSize: 682.1 KiB

Command output

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### Running command:
###
###   rm -rf gaga.buildbin-libdir && mkdir gaga.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=gaga.buildbin-libdir gaga_2.26.0.tar.gz
###
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install for i386

* installing *source* package 'gaga' ...
** libs
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c cseqdesma.c -o cseqdesma.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c cstat.c -o cstat.o
cstat.c: In function 'qnormC':
cstat.c:1638:3: warning: 'x' may be used uninitialized in this function [-Wmaybe-uninitialized]
   return y; 
   ^
cstat.c: In function 'pnormC':
cstat.c:1552:5: warning: 'p' may be used uninitialized in this function [-Wmaybe-uninitialized]
     p, q, mean,sd,bound,x,z; 
     ^
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o gaga.dll tmp.def cseqdesma.o cstat.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/gaga.buildbin-libdir/gaga/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'gaga'
    finding HTML links ... done
    buildPatterns                           html  
    checkfit                                html  
    classpred                               html  
    dcgamma                                 html  
    findgenes                               html  
    fitGG                                   html  
    forwsimDiffExpr                         html  
    geneclus                                html  
    getpar                                  html  
    parest                                  html  
    plotForwSim                             html  
    posmeansGG                              html  
    powclasspred                            html  
    powfindgenes                            html  
    print.gagaclus                          html  
    print.gagafit                           html  
    print.gagahyp                           html  
    seqBoundariesGrid                       html  
    simGG                                   html  
    simnewsamples                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'gaga' ...
** libs
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c cseqdesma.c -o cseqdesma.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c cstat.c -o cstat.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o gaga.dll tmp.def cseqdesma.o cstat.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/gaga.buildbin-libdir/gaga/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'gaga' as gaga_2.26.0.zip
* DONE (gaga)
In R CMD INSTALL
In R CMD INSTALL