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BUILD BIN report for gQTLstats on tokay2

This page was generated on 2018-10-17 08:39:45 -0400 (Wed, 17 Oct 2018).

Package 643/1561HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
gQTLstats 1.12.0
VJ Carey
Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018)
URL: https://git.bioconductor.org/packages/gQTLstats
Branch: RELEASE_3_7
Last Commit: b0faafd
Last Changed Date: 2018-04-30 10:35:35 -0400 (Mon, 30 Apr 2018)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  WARNINGS [ OK ]UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: gQTLstats
Version: 1.12.0
Command: rm -rf gQTLstats.buildbin-libdir && mkdir gQTLstats.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=gQTLstats.buildbin-libdir gQTLstats_1.12.0.tar.gz
StartedAt: 2018-10-17 06:26:54 -0400 (Wed, 17 Oct 2018)
EndedAt: 2018-10-17 06:30:59 -0400 (Wed, 17 Oct 2018)
EllapsedTime: 245.2 seconds
RetCode: 0
Status:  OK  
PackageFile: gQTLstats_1.12.0.zip
PackageFileSize: 63.59 MiB

Command output

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### Running command:
###
###   rm -rf gQTLstats.buildbin-libdir && mkdir gQTLstats.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=gQTLstats.buildbin-libdir gQTLstats_1.12.0.tar.gz
###
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install for i386

* installing *source* package 'gQTLstats' ...
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'gQTLstats'
    finding HTML links ... done
    FDRsupp-class                           html  
    TransStore-class                        html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpqYAkUR/R.INSTALL23443e8f41dc/gQTLstats/man/TransStore-class.Rd:19: file link 'Registry' in package 'BatchJobs' does not exist and so has been treated as a topic
    TransStore                              html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpqYAkUR/R.INSTALL23443e8f41dc/gQTLstats/man/TransStore.Rd:18: file link 'Registry' in package 'BatchJobs' does not exist and so has been treated as a topic
    cisAssoc                                html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpqYAkUR/R.INSTALL23443e8f41dc/gQTLstats/man/cisAssoc.Rd:37: file link 'RangedSummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpqYAkUR/R.INSTALL23443e8f41dc/gQTLstats/man/cisAssoc.Rd:40: file link 'TabixFile' in package 'Rsamtools' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpqYAkUR/R.INSTALL23443e8f41dc/gQTLstats/man/cisAssoc.Rd:63: file link 'col.summary' in package 'snpStats' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpqYAkUR/R.INSTALL23443e8f41dc/gQTLstats/man/cisAssoc.Rd:75: file link 'isSNV' in package 'VariantAnnotation' does not exist and so has been treated as a topic
    clipPCs                                 html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpqYAkUR/R.INSTALL23443e8f41dc/gQTLstats/man/clipPCs.Rd:24: file link 'RangedSummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpqYAkUR/R.INSTALL23443e8f41dc/gQTLstats/man/clipPCs.Rd:50: file link 'RangedSummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
    directPlot                              html  
    enumerateByFDR                          html  
    finding level-2 HTML links ... done

    eqBox2                                  html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpqYAkUR/R.INSTALL23443e8f41dc/gQTLstats/man/eqBox2.Rd:27: file link 'RangedSummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
    filtFDR                                 html  
    gQTLs                                   html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpqYAkUR/R.INSTALL23443e8f41dc/gQTLstats/man/gQTLs.Rd:29: file link 'readVcf' in package 'VariantAnnotation' does not exist and so has been treated as a topic
    gQTLstats-package                       html  
    hmm878                                  html  
    manhWngr                                html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpqYAkUR/R.INSTALL23443e8f41dc/gQTLstats/man/manhWngr.Rd:28: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
    mixedVCFtoSnpMatrix                     html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpqYAkUR/R.INSTALL23443e8f41dc/gQTLstats/man/mixedVCFtoSnpMatrix.Rd:18: file link 'CollapsedVCF-class' in package 'VariantAnnotation' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpqYAkUR/R.INSTALL23443e8f41dc/gQTLstats/man/mixedVCFtoSnpMatrix.Rd:24: file link 'genotypeToSnpMatrix' in package 'VariantAnnotation' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpqYAkUR/R.INSTALL23443e8f41dc/gQTLstats/man/mixedVCFtoSnpMatrix.Rd:32: file link 'genotypeToSnpMatrix' in package 'VariantAnnotation' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpqYAkUR/R.INSTALL23443e8f41dc/gQTLstats/man/mixedVCFtoSnpMatrix.Rd:50: file link 'genotypeToSnpMatrix' in package 'VariantAnnotation' does not exist and so has been treated as a topic
    pifdr                                   html  
    qqStore                                 html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpqYAkUR/R.INSTALL23443e8f41dc/gQTLstats/man/qqStore.Rd:28: file link 'storeToQuantiles' in package 'gQTLstats' does not exist and so has been treated as a topic
    queryVCF                                html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpqYAkUR/R.INSTALL23443e8f41dc/gQTLstats/man/queryVCF.Rd:29: file link 'genotypeToSnpMatrix' in package 'VariantAnnotation' does not exist and so has been treated as a topic
    senstab                                 html  
    setFDRfunc                              html  
    storeToStats                            html  
    tqbrowser                               html  
    transAssoc                              html  
    transBrowse                             html  
    tsByRank                                html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpqYAkUR/R.INSTALL23443e8f41dc/gQTLstats/man/tsByRank.Rd:52: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
    txsPlot                                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'gQTLstats' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'gQTLstats' as gQTLstats_1.12.0.zip
* DONE (gQTLstats)
In R CMD INSTALL
In R CMD INSTALL