Back to Multiple platform build/check report for BioC 3.7 |
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This page was generated on 2018-10-17 08:29:23 -0400 (Wed, 17 Oct 2018).
Package 550/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
gCrisprTools 1.8.0 Peter Haverty
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | [ OK ] | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: gCrisprTools |
Version: 1.8.0 |
Command: /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD check --install=check:gCrisprTools.install-out.txt --library=/home/biocbuild/bbs-3.7-bioc/R/library --no-vignettes --timings gCrisprTools_1.8.0.tar.gz |
StartedAt: 2018-10-16 00:35:06 -0400 (Tue, 16 Oct 2018) |
EndedAt: 2018-10-16 00:39:39 -0400 (Tue, 16 Oct 2018) |
EllapsedTime: 272.6 seconds |
RetCode: 0 |
Status: OK |
CheckDir: gCrisprTools.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD check --install=check:gCrisprTools.install-out.txt --library=/home/biocbuild/bbs-3.7-bioc/R/library --no-vignettes --timings gCrisprTools_1.8.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.7-bioc/meat/gCrisprTools.Rcheck’ * using R version 3.5.1 Patched (2018-07-12 r74967) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘gCrisprTools/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘gCrisprTools’ version ‘1.8.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘gCrisprTools’ can be installed ... OK * checking installed package size ... NOTE installed size is 8.2Mb sub-directories of 1Mb or more: data 2.3Mb * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU or elapsed time > 5s user system elapsed ct.PantherPathwayEnrichment 77.348 1.540 80.629 ct.makeReport 20.284 0.576 20.899 ct.makeContrastReport 8.968 0.668 9.672 ct.guideCDF 7.428 0.300 7.735 ct.makeQCReport 5.956 0.288 6.266 ct.GCbias 5.776 0.068 5.854 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘unit.tests.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/home/biocbuild/bbs-3.7-bioc/meat/gCrisprTools.Rcheck/00check.log’ for details.
gCrisprTools.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD INSTALL gCrisprTools ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.7-bioc/R/library’ * installing *source* package ‘gCrisprTools’ ... ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (gCrisprTools)
gCrisprTools.Rcheck/tests/unit.tests.Rout
R version 3.5.1 Patched (2018-07-12 r74967) -- "Feather Spray" Copyright (C) 2018 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > #require("BiocGenerics", quietly = TRUE) > BiocGenerics:::testPackage("gCrisprTools") PANTHER.db version 1.0.4 RUNIT TEST PROTOCOL -- Tue Oct 16 00:39:36 2018 *********************************************** Number of test functions: 0 Number of errors: 0 Number of failures: 0 1 Test Suite : gCrisprTools RUnit Tests - 0 test functions, 0 errors, 0 failures Number of test functions: 0 Number of errors: 0 Number of failures: 0 > > proc.time() user system elapsed 3.008 0.128 3.132
gCrisprTools.Rcheck/gCrisprTools-Ex.timings
name | user | system | elapsed | |
aln | 0.004 | 0.000 | 0.020 | |
ann | 0.136 | 0.000 | 0.146 | |
ct.DirectionalTests | 0.340 | 0.056 | 0.406 | |
ct.GCbias | 5.776 | 0.068 | 5.854 | |
ct.PRC | 0.952 | 0.016 | 0.986 | |
ct.PantherPathwayEnrichment | 77.348 | 1.540 | 80.629 | |
ct.ROC | 0.152 | 0.004 | 0.157 | |
ct.RRAaPvals | 1.632 | 0.068 | 1.705 | |
ct.RRAalpha | 0.240 | 0.000 | 0.242 | |
ct.alignmentChart | 0.000 | 0.004 | 0.005 | |
ct.alphaBeta | 0.008 | 0.000 | 0.007 | |
ct.ecdf | 0.004 | 0.000 | 0.001 | |
ct.filterReads | 0.220 | 0.000 | 0.221 | |
ct.gRNARankByReplicate | 0.408 | 0.008 | 0.415 | |
ct.generateResults | 0.464 | 0.000 | 0.465 | |
ct.guideCDF | 7.428 | 0.300 | 7.735 | |
ct.inputCheck | 0.076 | 0.000 | 0.077 | |
ct.makeContrastReport | 8.968 | 0.668 | 9.672 | |
ct.makeQCReport | 5.956 | 0.288 | 6.266 | |
ct.makeReport | 20.284 | 0.576 | 20.899 | |
ct.normalizeBySlope | 1.028 | 0.056 | 1.085 | |
ct.normalizeGuides | 3.292 | 0.108 | 3.406 | |
ct.normalizeMedians | 0.712 | 0.036 | 0.751 | |
ct.normalizeNTC | 0.876 | 0.028 | 0.904 | |
ct.normalizeSpline | 1.016 | 0.032 | 1.048 | |
ct.prepareAnnotation | 0.528 | 0.024 | 0.554 | |
ct.preprocessFit | 1.784 | 0.124 | 1.908 | |
ct.rawCountDensities | 0.124 | 0.004 | 0.132 | |
ct.resultCheck | 0.104 | 0.004 | 0.110 | |
ct.stackGuides | 4.088 | 0.164 | 4.256 | |
ct.targetSetEnrichment | 0.108 | 0.004 | 0.114 | |
ct.topTargets | 0.376 | 0.004 | 0.380 | |
ct.viewControls | 0.240 | 0.004 | 0.243 | |
ct.viewGuides | 0.308 | 0.016 | 0.323 | |
es | 0.052 | 0.000 | 0.051 | |
essential.genes | 0.004 | 0.000 | 0.002 | |
fit | 0.168 | 0.004 | 0.171 | |
resultsDF | 0.116 | 0.000 | 0.115 | |