Federico Marini
| Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018) |
| URL: https://git.bioconductor.org/packages/flowcatchR |
| Branch: RELEASE_3_7 |
| Last Commit: 2df8ede |
| Last Changed Date: 2018-04-30 10:35:34 -0400 (Mon, 30 Apr 2018) |
| Back to Multiple platform build/check report for BioC 3.7 |
|
This page was generated on 2018-10-17 08:39:26 -0400 (Wed, 17 Oct 2018).
| Package 497/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| flowcatchR 1.14.0 Federico Marini
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: flowcatchR |
| Version: 1.14.0 |
| Command: C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:flowcatchR.install-out.txt --library=C:\Users\biocbuild\bbs-3.7-bioc\R\library --no-vignettes --timings flowcatchR_1.14.0.tar.gz |
| StartedAt: 2018-10-17 01:59:48 -0400 (Wed, 17 Oct 2018) |
| EndedAt: 2018-10-17 02:01:37 -0400 (Wed, 17 Oct 2018) |
| EllapsedTime: 109.3 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: flowcatchR.Rcheck |
| Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:flowcatchR.install-out.txt --library=C:\Users\biocbuild\bbs-3.7-bioc\R\library --no-vignettes --timings flowcatchR_1.14.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.7-bioc/meat/flowcatchR.Rcheck' * using R version 3.5.1 Patched (2018-07-24 r75005) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'flowcatchR/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'flowcatchR' version '1.14.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... NOTE Found the following hidden files and directories: .travis.yml These were most likely included in error. See section 'Package structure' in the 'Writing R Extensions' manual. * checking for portable file names ... OK * checking whether package 'flowcatchR' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE 'library' or 'require' call to 'EBImage' which was already attached by Depends. Please remove these calls from your code. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK ** running examples for arch 'x64' ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See 'C:/Users/biocbuild/bbs-3.7-bioc/meat/flowcatchR.Rcheck/00check.log' for details.
flowcatchR.Rcheck/00install.out
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### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/flowcatchR_1.14.0.tar.gz && rm -rf flowcatchR.buildbin-libdir && mkdir flowcatchR.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=flowcatchR.buildbin-libdir flowcatchR_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL flowcatchR_1.14.0.zip && rm flowcatchR_1.14.0.tar.gz flowcatchR_1.14.0.zip
###
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install for i386
* installing *source* package 'flowcatchR' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'flowcatchR'
finding HTML links ... done
Frames-class html
Frames html
KinematicsFeatures-class html
KinematicsFeaturesSet-class html
LinkedParticleSet-class html
MesenteriumSubset html
ParticleSet-class html
TrajectorySet-class html
add.contours html
addParticles html
axesInfo html
candidate.platelets html
channel.Frames html
computeMSD html
crop.Frames html
finding level-2 HTML links ... done
export.Frames html
export.particles html
extractKinematics.traj html
flowcatchR html
initialize.LinkedParticleSet html
inspect.Frames html
kinematics html
length.Frames html
link.particles html
matchTrajToParticles html
normalizeFrames html
particles html
penaltyFunctionGenerator html
plot.TrajectorySet html
plot2D.TrajectorySet html
preprocess.Frames html
read.Frames html
read.particles html
repmat html
rotate.Frames html
select.Frames html
select.particles html
shinyFlow html
show-Frames-method html
show-KinematicsFeatures-method html
show-KinematicsFeaturesSet-method html
show-LinkedParticleSet-method html
show-ParticleSet-method html
show-TrajectorySet-method html
snap html
toCartesianCoords html
toPolarCoords html
trajectories html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'flowcatchR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'flowcatchR' as flowcatchR_1.14.0.zip
* DONE (flowcatchR)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'flowcatchR' successfully unpacked and MD5 sums checked
In R CMD INSTALL
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flowcatchR.Rcheck/examples_i386/flowcatchR-Ex.timings
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flowcatchR.Rcheck/examples_x64/flowcatchR-Ex.timings
|