Xiaoyuan Zhou
| Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018) |
| URL: https://git.bioconductor.org/packages/eudysbiome |
| Branch: RELEASE_3_7 |
| Last Commit: 382b2c5 |
| Last Changed Date: 2018-04-30 10:35:37 -0400 (Mon, 30 Apr 2018) |
| Back to Multiple platform build/check report for BioC 3.7 |
|
This page was generated on 2018-10-17 08:40:56 -0400 (Wed, 17 Oct 2018).
| Package 464/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| eudysbiome 1.10.0 Xiaoyuan Zhou
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: eudysbiome |
| Version: 1.10.0 |
| Command: C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:eudysbiome.install-out.txt --library=C:\Users\biocbuild\bbs-3.7-bioc\R\library --no-vignettes --timings eudysbiome_1.10.0.tar.gz |
| StartedAt: 2018-10-17 01:52:32 -0400 (Wed, 17 Oct 2018) |
| EndedAt: 2018-10-17 01:54:31 -0400 (Wed, 17 Oct 2018) |
| EllapsedTime: 118.3 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: eudysbiome.Rcheck |
| Warnings: 0 |
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### Running command:
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### C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:eudysbiome.install-out.txt --library=C:\Users\biocbuild\bbs-3.7-bioc\R\library --no-vignettes --timings eudysbiome_1.10.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.7-bioc/meat/eudysbiome.Rcheck'
* using R version 3.5.1 Patched (2018-07-24 r75005)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'eudysbiome/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'eudysbiome' version '1.10.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'eudysbiome' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
Cartesian: no visible global function definition for 'adjustcolor'
Cartesian: no visible global function definition for 'colors'
Cartesian: no visible global function definition for 'dev.hold'
Cartesian: no visible global function definition for 'dev.flush'
Cartesian: no visible global function definition for 'plot'
Cartesian: no visible global function definition for 'points'
Cartesian: no visible global function definition for 'abline'
Cartesian: no visible global function definition for 'axis'
Cartesian: no visible global function definition for 'text'
Cartesian: no visible global function definition for 'par'
Cartesian: no visible global function definition for 'mtext'
Cartesian: no visible global function definition for 'title'
Cartesian: no visible global function definition for 'rect'
assignTax: no visible global function definition for 'download.file'
assignTax: no visible global function definition for 'unzip'
assignTax: no visible global function definition for 'bunzip2'
contingencyTest: no visible global function definition for 'combn'
contingencyTest : <anonymous>: no visible global function definition
for 'chisq.test'
microAnnotate: no visible global function definition for 'data'
microAnnotate: no visible binding for global variable 'harmGenera'
tableSpecies: no visible global function definition for 'read.table'
Undefined global functions or variables:
abline adjustcolor axis bunzip2 chisq.test colors combn data
dev.flush dev.hold download.file harmGenera mtext par plot points
read.table rect text title unzip
Consider adding
importFrom("grDevices", "adjustcolor", "colors", "dev.flush",
"dev.hold")
importFrom("graphics", "abline", "axis", "mtext", "par", "plot",
"points", "rect", "text", "title")
importFrom("stats", "chisq.test")
importFrom("utils", "combn", "data", "download.file", "read.table",
"unzip")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
'C:/Users/biocbuild/bbs-3.7-bioc/meat/eudysbiome.Rcheck/00check.log'
for details.
eudysbiome.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/eudysbiome_1.10.0.tar.gz && rm -rf eudysbiome.buildbin-libdir && mkdir eudysbiome.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=eudysbiome.buildbin-libdir eudysbiome_1.10.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL eudysbiome_1.10.0.zip && rm eudysbiome_1.10.0.tar.gz eudysbiome_1.10.0.zip
###
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 2075k 100 2075k 0 0 26.5M 0 --:--:-- --:--:-- --:--:-- 29.3M
install for i386
* installing *source* package 'eudysbiome' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'eudysbiome'
finding HTML links ... done
Cartesian html
assignTax html
contingencyCount html
contingencyTest html
diffGenera html
eudysbiome html
harmGenera html
microAnnotate html
microCount html
microDiff html
tableSpecies html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'eudysbiome' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'eudysbiome' as eudysbiome_1.10.0.zip
* DONE (eudysbiome)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'eudysbiome' successfully unpacked and MD5 sums checked
In R CMD INSTALL
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eudysbiome.Rcheck/examples_i386/eudysbiome-Ex.timings
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eudysbiome.Rcheck/examples_x64/eudysbiome-Ex.timings
|