Charlotte Siska
| Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018) |
| URL: https://git.bioconductor.org/packages/discordant |
| Branch: RELEASE_3_7 |
| Last Commit: 31a4d76 |
| Last Changed Date: 2018-04-30 10:35:45 -0400 (Mon, 30 Apr 2018) |
| Back to Multiple platform build/check report for BioC 3.7 |
|
This page was generated on 2018-10-17 08:43:25 -0400 (Wed, 17 Oct 2018).
| Package 393/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| discordant 1.4.0 Charlotte Siska
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: discordant |
| Version: 1.4.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/discordant_1.4.0.tar.gz && rm -rf discordant.buildbin-libdir && mkdir discordant.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=discordant.buildbin-libdir discordant_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL discordant_1.4.0.zip && rm discordant_1.4.0.tar.gz discordant_1.4.0.zip |
| StartedAt: 2018-10-16 18:59:54 -0400 (Tue, 16 Oct 2018) |
| EndedAt: 2018-10-16 19:00:26 -0400 (Tue, 16 Oct 2018) |
| EllapsedTime: 31.9 seconds |
| RetCode: 0 |
| Status: OK |
##############################################################################
##############################################################################
###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/discordant_1.4.0.tar.gz && rm -rf discordant.buildbin-libdir && mkdir discordant.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=discordant.buildbin-libdir discordant_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL discordant_1.4.0.zip && rm discordant_1.4.0.tar.gz discordant_1.4.0.zip
###
##############################################################################
##############################################################################
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 189k 100 189k 0 0 1890k 0 --:--:-- --:--:-- --:--:-- 2035k
install for i386
* installing *source* package 'discordant' ...
** libs
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c discordant.c -o discordant.o
discordant.c: In function 'em_normal_partial_concordant':
discordant.c:21:13: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
while(flag>0 & iter<(*iteration)){
^
discordant.c:147:13: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
while(flag>0 & iter<(*iteration)){
^
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o discordant.dll tmp.def discordant.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/discordant.buildbin-libdir/discordant/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'discordant'
finding HTML links ... done
TCGA_Breast_RNASeq html
TCGA_Breast_RNASeq_voom html
TCGA_Breast_miRNASeq html
TCGA_Breast_miRNASeq_voom html
TCGA_GBM_miRNA_microarray html
TCGA_GBM_transcript_microarray html
createVectors html
discordantRun html
fishersTrans html
split.MADOutlier html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'discordant' ...
** libs
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c discordant.c -o discordant.o
discordant.c: In function 'em_normal_partial_concordant':
discordant.c:21:13: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
while(flag>0 & iter<(*iteration)){
^
discordant.c:147:13: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
while(flag>0 & iter<(*iteration)){
^
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o discordant.dll tmp.def discordant.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/discordant.buildbin-libdir/discordant/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'discordant' as discordant_1.4.0.zip
* DONE (discordant)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'discordant' successfully unpacked and MD5 sums checked
In R CMD INSTALL