Back to Multiple platform build/check report for BioC 3.7 |
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This page was generated on 2018-10-17 08:41:25 -0400 (Wed, 17 Oct 2018).
Package 141/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
biomformat 1.8.0 Paul J. McMurdie
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: biomformat |
Version: 1.8.0 |
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/biomformat_1.8.0.tar.gz && rm -rf biomformat.buildbin-libdir && mkdir biomformat.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=biomformat.buildbin-libdir biomformat_1.8.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL biomformat_1.8.0.zip && rm biomformat_1.8.0.tar.gz biomformat_1.8.0.zip |
StartedAt: 2018-10-16 18:51:39 -0400 (Tue, 16 Oct 2018) |
EndedAt: 2018-10-16 18:52:21 -0400 (Tue, 16 Oct 2018) |
EllapsedTime: 41.2 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/biomformat_1.8.0.tar.gz && rm -rf biomformat.buildbin-libdir && mkdir biomformat.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=biomformat.buildbin-libdir biomformat_1.8.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL biomformat_1.8.0.zip && rm biomformat_1.8.0.tar.gz biomformat_1.8.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 30612 100 30612 0 0 474k 0 --:--:-- --:--:-- --:--:-- 533k install for i386 * installing *source* package 'biomformat' ... ** R ** inst ** byte-compile and prepare package for lazy loading Creating a generic function for 'nrow' from package 'base' in package 'biomformat' Creating a generic function for 'ncol' from package 'base' in package 'biomformat' Creating a generic function for 'rownames' from package 'base' in package 'biomformat' Creating a generic function for 'colnames' from package 'base' in package 'biomformat' ** help *** installing help indices converting help for package 'biomformat' finding HTML links ... done biom-class html biom-methods html finding level-2 HTML links ... done biom-package html biom_data-methods html biom_shape-methods html colnames-methods html header-methods html make_biom html matrix_element_type-methods html ncol-methods html Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOa6tkg/R.INSTALL165858b46df3/biomformat/man/ncol-methods.Rd:6: file link 'ncol' in package 'base' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOa6tkg/R.INSTALL165858b46df3/biomformat/man/ncol-methods.Rd:19: file link 'ncol' in package 'base' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOa6tkg/R.INSTALL165858b46df3/biomformat/man/ncol-methods.Rd:31: file link 'ncol' in package 'base' does not exist and so has been treated as a topic nrow-methods html observation_metadata-methods html read_biom html read_hdf5_biom html rownames-methods html Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOa6tkg/R.INSTALL165858b46df3/biomformat/man/rownames-methods.Rd:6: file link 'rownames' in package 'base' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOa6tkg/R.INSTALL165858b46df3/biomformat/man/rownames-methods.Rd:19: file link 'rownames' in package 'base' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOa6tkg/R.INSTALL165858b46df3/biomformat/man/rownames-methods.Rd:31: file link 'rownames' in package 'base' does not exist and so has been treated as a topic sample_metadata-methods html show-methods html write_biom html ** building package indices ** installing vignettes ** testing if installed package can be loaded In R CMD INSTALL install for x64 * installing *source* package 'biomformat' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'biomformat' as biomformat_1.8.0.zip * DONE (biomformat) In R CMD INSTALL In R CMD INSTALL * installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library' package 'biomformat' successfully unpacked and MD5 sums checked In R CMD INSTALL