Eivind Valen
| Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018) |
| URL: https://git.bioconductor.org/packages/amplican |
| Branch: RELEASE_3_7 |
| Last Commit: 54d0eff |
| Last Changed Date: 2018-06-14 17:16:48 -0400 (Thu, 14 Jun 2018) |
| Back to Multiple platform build/check report for BioC 3.7 |
|
This page was generated on 2018-10-17 08:44:31 -0400 (Wed, 17 Oct 2018).
| Package 41/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| amplican 1.2.1 Eivind Valen
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: amplican |
| Version: 1.2.1 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/amplican_1.2.1.tar.gz && rm -rf amplican.buildbin-libdir && mkdir amplican.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=amplican.buildbin-libdir amplican_1.2.1.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL amplican_1.2.1.zip && rm amplican_1.2.1.tar.gz amplican_1.2.1.zip |
| StartedAt: 2018-10-16 19:47:37 -0400 (Tue, 16 Oct 2018) |
| EndedAt: 2018-10-16 19:49:18 -0400 (Tue, 16 Oct 2018) |
| EllapsedTime: 101.1 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/amplican_1.2.1.tar.gz && rm -rf amplican.buildbin-libdir && mkdir amplican.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=amplican.buildbin-libdir amplican_1.2.1.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL amplican_1.2.1.zip && rm amplican_1.2.1.tar.gz amplican_1.2.1.zip
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install for i386
* installing *source* package 'amplican' ...
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'amplican'
finding HTML links ... done
AlignmentsExperimentSet-class html
finding level-2 HTML links ... done
alphabetQuality html
amplican html
amplicanAlign html
amplicanConsensus html
amplicanFilter html
amplicanMap html
amplicanNormalize html
amplicanOverlap html
amplicanPipeline html
amplicanReport html
amplicanSummarize html
amplican_print_reads html
assignedCount html
barcodeData-set html
barcodeData html
checkConfigFile html
checkFileWriteAccess html
checkPrimers html
checkTarget html
cigarsToEvents html
comb_along html
cumsumw html
decode html
defGR html
experimentData-set html
experimentData html
extractEvents html
findEOP html
findLQR html
findPD html
flipRanges html
fwdReads-set html
fwdReads html
fwdReadsType-set html
fwdReadsType html
getEventInfo html
getEvents html
get_amplicon html
get_left_primer html
get_right_primer html
goodAvgQuality html
goodBaseQuality html
lookupAlignment html
makeAlignment html
metaplot_deletions html
metaplot_insertions html
metaplot_mismatches html
pairToEvents html
plot_amplicon html
plot_cuts html
plot_deletions html
plot_height html
plot_heterogeneity html
plot_insertions html
plot_mismatches html
plot_variants html
readCounts-set html
readCounts html
revComp html
rveReads-set html
rveReads html
rveReadsType-set html
rveReadsType html
unassignedCount html
unassignedData-set html
unassignedData html
upperGroups html
writeAlignments html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'amplican' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'amplican' as amplican_1.2.1.zip
* DONE (amplican)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'amplican' successfully unpacked and MD5 sums checked
In R CMD INSTALL