Rafael A. Irizarry
| Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018) |
| URL: https://git.bioconductor.org/packages/affy |
| Branch: RELEASE_3_7 |
| Last Commit: 4698231 |
| Last Changed Date: 2018-04-30 10:34:55 -0400 (Mon, 30 Apr 2018) |
| Back to Multiple platform build/check report for BioC 3.7 |
|
This page was generated on 2018-10-17 08:46:00 -0400 (Wed, 17 Oct 2018).
| Package 17/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| affy 1.58.0 Rafael A. Irizarry
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | [ OK ] | |
| Package: affy |
| Version: 1.58.0 |
| Command: rm -rf affy.buildbin-libdir && mkdir affy.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh affy_1.58.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R affy.buildbin-libdir |
| StartedAt: 2018-10-17 00:52:48 -0400 (Wed, 17 Oct 2018) |
| EndedAt: 2018-10-17 00:53:28 -0400 (Wed, 17 Oct 2018) |
| EllapsedTime: 39.9 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: affy_1.58.0.tgz |
| PackageFileSize: 1.564 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf affy.buildbin-libdir && mkdir affy.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh affy_1.58.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R affy.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=affy.buildbin-libdir affy_1.58.0.tar.gz' >>>>>>> * installing *source* package ‘affy’ ... creating cache ./config.cache checking how to run the C preprocessor... cc -E checking for main in -lz... yes checking for zlib.h... yes checking if zlib version >= 1.1.3... yes updating cache ./config.cache creating ./config.status creating src/Makevars ** libs clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DHAVE_ZLIB=1 -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/preprocessCore/include" -I/usr/local/include -fPIC -Wall -g -O2 -c chipbackground.c -o chipbackground.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DHAVE_ZLIB=1 -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/preprocessCore/include" -I/usr/local/include -fPIC -Wall -g -O2 -c getall_locations.c -o getall_locations.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DHAVE_ZLIB=1 -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/preprocessCore/include" -I/usr/local/include -fPIC -Wall -g -O2 -c mas5calls.c -o mas5calls.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DHAVE_ZLIB=1 -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/preprocessCore/include" -I/usr/local/include -fPIC -Wall -g -O2 -c rma2.c -o rma2.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DHAVE_ZLIB=1 -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/preprocessCore/include" -I/usr/local/include -fPIC -Wall -g -O2 -c rma_common.c -o rma_common.o clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o affy.so chipbackground.o getall_locations.o mas5calls.o rma2.o rma_common.o -lz -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Users/biocbuild/bbs-3.7-bioc/meat/affy.buildbin-libdir/affy/libs ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (affy) >>>>>>> >>>>>>> FIXING LINKS FOR affy.buildbin-libdir/affy/libs//affy.so >>>>>>> install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgcc_s.1.dylib" "affy.buildbin-libdir/affy/libs//affy.so" install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgfortran.3.dylib" "affy.buildbin-libdir/affy/libs//affy.so" install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libreadline.5.2.dylib" "affy.buildbin-libdir/affy/libs//affy.so" install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libreadline.dylib" "affy.buildbin-libdir/affy/libs//affy.so" install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libquadmath.0.dylib" "affy.buildbin-libdir/affy/libs//affy.so"