Back to Multiple platform build/check report for BioC 3.7 |
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This page was generated on 2018-10-17 08:33:33 -0400 (Wed, 17 Oct 2018).
Package 1529/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
VanillaICE 1.42.4 Robert Scharpf
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | [ OK ] | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: VanillaICE |
Version: 1.42.4 |
Command: rm -rf VanillaICE.buildbin-libdir && mkdir VanillaICE.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=VanillaICE.buildbin-libdir VanillaICE_1.42.4.tar.gz |
StartedAt: 2018-10-17 07:06:20 -0400 (Wed, 17 Oct 2018) |
EndedAt: 2018-10-17 07:07:04 -0400 (Wed, 17 Oct 2018) |
EllapsedTime: 43.3 seconds |
RetCode: 0 |
Status: OK |
PackageFile: VanillaICE_1.42.4.zip |
PackageFileSize: 2.453 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf VanillaICE.buildbin-libdir && mkdir VanillaICE.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=VanillaICE.buildbin-libdir VanillaICE_1.42.4.tar.gz ### ############################################################################## ############################################################################## install for i386 * installing *source* package 'VanillaICE' ... ** libs C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c rinit.c -o rinit.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c viterbi.c -o viterbi.o C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o VanillaICE.dll tmp.def rinit.o viterbi.o -lm -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/VanillaICE.buildbin-libdir/VanillaICE/libs/i386 ** R ** data ** inst ** byte-compile and prepare package for lazy loading Creating a new generic function for 'distance' in package 'VanillaICE' ** help *** installing help indices converting help for package 'VanillaICE' finding HTML links ... done ArrayViews-class html CopyNumScanParams html finding level-2 HTML links ... done EmissionParam-methods html FilterParam-class html HMM html HMMList-class html HMMList html HmmGRanges-methods html HmmParam html HmmTrellisParam html IO html IdiogramParam-class html IdiogramParams-class html LogLik-class html LogLik html LowLevelSummaries html NA_filter html SnpArrayExperiment-class html SnpExperiment html SnpGRanges html TransitionParam html VanillaICE html Viterbi-methods html acf2 html baumWelchUpdate html calculateEmission html cnvFilter html doUpdate html dropDuplicatedMapLocs html dropSexChrom html emission html emissionParam html filters html getExampleSnpExperiment html getHmmParams html hmm2 html hmmResults html isHeterozygous html matrixOrNULL-class html numberFeatures html parseSourceFile html parsedPath html plotting html probability html rescale html robust-statistics html segs html snpArrayAssays html snp_exp html sourcePaths html start-oligoSnpSet-method html state-methods html sweepMode html threshold html updateHmmParams html viewports html ** building package indices ** installing vignettes ** testing if installed package can be loaded In R CMD INSTALL install for x64 * installing *source* package 'VanillaICE' ... ** libs C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c rinit.c -o rinit.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c viterbi.c -o viterbi.o C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o VanillaICE.dll tmp.def rinit.o viterbi.o -lm -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/VanillaICE.buildbin-libdir/VanillaICE/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'VanillaICE' as VanillaICE_1.42.4.zip * DONE (VanillaICE) In R CMD INSTALL In R CMD INSTALL