Back to Multiple platform build/check report for BioC 3.7 |
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This page was generated on 2018-10-17 08:59:29 -0400 (Wed, 17 Oct 2018).
Package 1515/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
TTMap 1.2.0 Rachel Jeitziner
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | [ WARNINGS ] | OK |
Package: TTMap |
Version: 1.2.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:TTMap.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings TTMap_1.2.0.tar.gz |
StartedAt: 2018-10-17 00:32:52 -0400 (Wed, 17 Oct 2018) |
EndedAt: 2018-10-17 00:37:00 -0400 (Wed, 17 Oct 2018) |
EllapsedTime: 247.7 seconds |
RetCode: 0 |
Status: WARNINGS |
CheckDir: TTMap.Rcheck |
Warnings: 1 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:TTMap.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings TTMap_1.2.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.7-bioc/meat/TTMap.Rcheck’ * using R version 3.5.1 Patched (2018-07-12 r74967) * using platform: x86_64-apple-darwin15.6.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘TTMap/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘TTMap’ version ‘1.2.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘TTMap’ can be installed ... WARNING Found the following significant warnings: Warning: 'rgl_init' failed, running with rgl.useNULL = TRUE See ‘/Users/biocbuild/bbs-3.7-bioc/meat/TTMap.Rcheck/00install.out’ for details. * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU or elapsed time > 5s user system elapsed calcul_e 19.218 0.399 19.714 ttmap_sgn_genes 17.579 0.246 17.932 ttmap 17.377 0.245 17.712 control_adjustment 15.936 0.171 16.229 hyperrectangle_deviation_assessment 15.157 0.226 15.458 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 WARNING See ‘/Users/biocbuild/bbs-3.7-bioc/meat/TTMap.Rcheck/00check.log’ for details.
TTMap.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL TTMap ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/3.5/Resources/library’ * installing *source* package ‘TTMap’ ... ** R ** byte-compile and prepare package for lazy loading Warning in rgl.init(initValue, onlyNULL) : RGL: GLX extension missing on server Warning: 'rgl_init' failed, running with rgl.useNULL = TRUE ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded Warning in rgl.init(initValue, onlyNULL) : RGL: GLX extension missing on server Warning: 'rgl_init' failed, running with rgl.useNULL = TRUE * DONE (TTMap)
TTMap.Rcheck/TTMap-Ex.timings
name | user | system | elapsed | |
TTMap-package | 0.001 | 0.000 | 0.001 | |
calcul_e | 19.218 | 0.399 | 19.714 | |
control_adjustment | 15.936 | 0.171 | 16.229 | |
generate_correlation | 0.004 | 0.000 | 0.005 | |
hyperrectangle_deviation_assessment | 15.157 | 0.226 | 15.458 | |
make_matrices | 3.962 | 0.117 | 4.105 | |
ttmap | 17.377 | 0.245 | 17.712 | |
ttmap_sgn_genes | 17.579 | 0.246 | 17.932 | |
write_pcl | 4.060 | 0.133 | 4.242 | |