Back to Multiple platform build/check report for BioC 3.7 |
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This page was generated on 2018-10-17 08:45:31 -0400 (Wed, 17 Oct 2018).
Package 1330/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
Sconify 1.0.4 Tyler J Burns
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: Sconify |
Version: 1.0.4 |
Command: C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:Sconify.install-out.txt --library=C:\Users\biocbuild\bbs-3.7-bioc\R\library --no-vignettes --timings Sconify_1.0.4.tar.gz |
StartedAt: 2018-10-17 04:42:15 -0400 (Wed, 17 Oct 2018) |
EndedAt: 2018-10-17 04:45:55 -0400 (Wed, 17 Oct 2018) |
EllapsedTime: 219.9 seconds |
RetCode: 0 |
Status: OK |
CheckDir: Sconify.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:Sconify.install-out.txt --library=C:\Users\biocbuild\bbs-3.7-bioc\R\library --no-vignettes --timings Sconify_1.0.4.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.7-bioc/meat/Sconify.Rcheck' * using R version 3.5.1 Patched (2018-07-24 r75005) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'Sconify/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'Sconify' version '1.0.4' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'Sconify' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK Examples with CPU or elapsed time > 5s user system elapsed SconeValues 15.38 0 15.38 ** running examples for arch 'x64' ... OK Examples with CPU or elapsed time > 5s user system elapsed SconeValues 24.95 0.00 24.96 ImputeTesting 8.60 0.02 8.61 SubsampleAndTsne 5.19 0.00 5.19 * checking for unstated dependencies in 'tests' ... OK * checking tests ... ** running tests for arch 'i386' ... Running 'testthat.R' OK ** running tests for arch 'x64' ... Running 'testthat.R' OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
Sconify.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/Sconify_1.0.4.tar.gz && rm -rf Sconify.buildbin-libdir && mkdir Sconify.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Sconify.buildbin-libdir Sconify_1.0.4.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL Sconify_1.0.4.zip && rm Sconify_1.0.4.tar.gz Sconify_1.0.4.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 2681k 100 2681k 0 0 26.6M 0 --:--:-- --:--:-- --:--:-- 28.1M install for i386 * installing *source* package 'Sconify' ... ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading Note: wrong number of arguments to '/' Note: wrong number of arguments to 'asinh' ** help *** installing help indices converting help for package 'Sconify' finding HTML links ... done AddTsne html FcsToTibble html Fnn html GetKnnDe html GetMarkerNames html Impute html ImputeTesting html LogTransformQ html MakeHist html MakeKnnList html MeaningOfLife html MultipleDonorStatistics html ParseMarkers html PostProcessing html ProcessMultipleFiles html QCorrectionThresholding html QuantNormalize html QuantNormalizeElements html RunStatistics html SconeValues html SplitFile html StringToNumbers html SubsampleAndTsne html TsneVis html bz.gmcsf.final html bz.gmcsf.final.norm.scale html exist html funct.markers html input.markers html markers html wand.combined html wand.final html wand.ideal.k html wand.il7 html wand.scone html ** building package indices ** installing vignettes ** testing if installed package can be loaded In R CMD INSTALL install for x64 * installing *source* package 'Sconify' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'Sconify' as Sconify_1.0.4.zip * DONE (Sconify) In R CMD INSTALL In R CMD INSTALL * installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library' package 'Sconify' successfully unpacked and MD5 sums checked In R CMD INSTALL
Sconify.Rcheck/tests_i386/testthat.Rout R version 3.5.1 Patched (2018-07-24 r75005) -- "Feather Spray" Copyright (C) 2018 The R Foundation for Statistical Computing Platform: i386-w64-mingw32/i386 (32-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(Sconify) > > test_check("Sconify") Read the 100 x 27 data matrix successfully! Using no_dims = 2, perplexity = 30.000000, and theta = 0.500000 Computing input similarities... Normalizing input... Building tree... - point 0 of 100 Done in 0.02 seconds (sparsity = 0.967400)! Learning embedding... Iteration 50: error is 49.786044 (50 iterations in 0.03 seconds) Iteration 100: error is 51.783430 (50 iterations in 0.01 seconds) Iteration 150: error is 52.026536 (50 iterations in 0.03 seconds) Iteration 200: error is 53.833611 (50 iterations in 0.05 seconds) Iteration 250: error is 51.466379 (50 iterations in 0.03 seconds) Iteration 300: error is 1.470436 (50 iterations in 0.02 seconds) Iteration 350: error is 0.697223 (50 iterations in 0.03 seconds) Iteration 400: error is 0.313801 (50 iterations in 0.02 seconds) Iteration 450: error is 0.233303 (50 iterations in 0.03 seconds) Iteration 500: error is 0.189997 (50 iterations in 0.03 seconds) Iteration 550: error is 0.187329 (50 iterations in 0.02 seconds) Iteration 600: error is 0.182730 (50 iterations in 0.03 seconds) Iteration 650: error is 0.184180 (50 iterations in 0.02 seconds) Iteration 700: error is 0.184346 (50 iterations in 0.03 seconds) Iteration 750: error is 0.186328 (50 iterations in 0.01 seconds) Iteration 800: error is 0.181269 (50 iterations in 0.03 seconds) Iteration 850: error is 0.184120 (50 iterations in 0.03 seconds) Iteration 900: error is 0.182946 (50 iterations in 0.02 seconds) Iteration 950: error is 0.184475 (50 iterations in 0.03 seconds) Iteration 1000: error is 0.183198 (50 iterations in 0.01 seconds) Fitting performed in 0.51 seconds. Read the 1000 x 27 data matrix successfully! Using no_dims = 2, perplexity = 30.000000, and theta = 0.500000 Computing input similarities... Normalizing input... Building tree... - point 0 of 1000 Done in 0.23 seconds (sparsity = 0.129120)! Learning embedding... Iteration 50: error is 64.590311 (50 iterations in 1.01 seconds) Iteration 100: error is 60.866576 (50 iterations in 0.83 seconds) Iteration 150: error is 60.380563 (50 iterations in 0.77 seconds) Iteration 200: error is 60.222199 (50 iterations in 0.80 seconds) Iteration 250: error is 60.150370 (50 iterations in 0.59 seconds) Iteration 300: error is 1.347637 (50 iterations in 0.59 seconds) Iteration 350: error is 1.238517 (50 iterations in 0.55 seconds) Iteration 400: error is 1.205479 (50 iterations in 0.59 seconds) Iteration 450: error is 1.191468 (50 iterations in 0.58 seconds) Iteration 500: error is 1.184365 (50 iterations in 0.50 seconds) Iteration 550: error is 1.178670 (50 iterations in 0.64 seconds) Iteration 600: error is 1.175947 (50 iterations in 0.55 seconds) Iteration 650: error is 1.173080 (50 iterations in 0.44 seconds) Iteration 700: error is 1.169378 (50 iterations in 0.57 seconds) Iteration 750: error is 1.166454 (50 iterations in 0.53 seconds) Iteration 800: error is 1.164542 (50 iterations in 0.55 seconds) Iteration 850: error is 1.162521 (50 iterations in 0.44 seconds) Iteration 900: error is 1.161031 (50 iterations in 0.58 seconds) Iteration 950: error is 1.158529 (50 iterations in 0.55 seconds) Iteration 1000: error is 1.156561 (50 iterations in 0.56 seconds) Fitting performed in 12.20 seconds. == testthat results =========================================================== OK: 72 SKIPPED: 0 FAILED: 0 > > proc.time() user system elapsed 33.87 0.64 34.56 |
Sconify.Rcheck/tests_x64/testthat.Rout R version 3.5.1 Patched (2018-07-24 r75005) -- "Feather Spray" Copyright (C) 2018 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(Sconify) > > test_check("Sconify") Read the 100 x 27 data matrix successfully! Using no_dims = 2, perplexity = 30.000000, and theta = 0.500000 Computing input similarities... Normalizing input... Building tree... - point 0 of 100 Done in 0.02 seconds (sparsity = 0.968400)! Learning embedding... Iteration 50: error is 50.330161 (50 iterations in 0.01 seconds) Iteration 100: error is 53.344698 (50 iterations in 0.03 seconds) Iteration 150: error is 52.736251 (50 iterations in 0.01 seconds) Iteration 200: error is 53.683559 (50 iterations in 0.03 seconds) Iteration 250: error is 50.967069 (50 iterations in 0.03 seconds) Iteration 300: error is 0.860760 (50 iterations in 0.01 seconds) Iteration 350: error is 0.242497 (50 iterations in 0.02 seconds) Iteration 400: error is 0.232266 (50 iterations in 0.03 seconds) Iteration 450: error is 0.235092 (50 iterations in 0.03 seconds) Iteration 500: error is 0.235927 (50 iterations in 0.01 seconds) Iteration 550: error is 0.209092 (50 iterations in 0.03 seconds) Iteration 600: error is 0.205877 (50 iterations in 0.02 seconds) Iteration 650: error is 0.205789 (50 iterations in 0.02 seconds) Iteration 700: error is 0.204714 (50 iterations in 0.03 seconds) Iteration 750: error is 0.206266 (50 iterations in 0.02 seconds) Iteration 800: error is 0.204981 (50 iterations in 0.01 seconds) Iteration 850: error is 0.205374 (50 iterations in 0.03 seconds) Iteration 900: error is 0.205111 (50 iterations in 0.02 seconds) Iteration 950: error is 0.206032 (50 iterations in 0.02 seconds) Iteration 1000: error is 0.205340 (50 iterations in 0.01 seconds) Fitting performed in 0.44 seconds. Read the 1000 x 27 data matrix successfully! Using no_dims = 2, perplexity = 30.000000, and theta = 0.500000 Computing input similarities... Normalizing input... Building tree... - point 0 of 1000 Done in 0.27 seconds (sparsity = 0.129120)! Learning embedding... Iteration 50: error is 64.191047 (50 iterations in 0.72 seconds) Iteration 100: error is 60.672015 (50 iterations in 0.50 seconds) Iteration 150: error is 60.325459 (50 iterations in 0.58 seconds) Iteration 200: error is 60.206115 (50 iterations in 0.52 seconds) Iteration 250: error is 60.140095 (50 iterations in 0.58 seconds) Iteration 300: error is 1.334459 (50 iterations in 0.47 seconds) Iteration 350: error is 1.226049 (50 iterations in 0.44 seconds) Iteration 400: error is 1.194437 (50 iterations in 0.45 seconds) Iteration 450: error is 1.181781 (50 iterations in 0.51 seconds) Iteration 500: error is 1.173023 (50 iterations in 0.52 seconds) Iteration 550: error is 1.167834 (50 iterations in 0.53 seconds) Iteration 600: error is 1.163341 (50 iterations in 0.48 seconds) Iteration 650: error is 1.160425 (50 iterations in 0.41 seconds) Iteration 700: error is 1.158837 (50 iterations in 0.41 seconds) Iteration 750: error is 1.157283 (50 iterations in 0.50 seconds) Iteration 800: error is 1.155755 (50 iterations in 0.44 seconds) Iteration 850: error is 1.154822 (50 iterations in 0.50 seconds) Iteration 900: error is 1.153746 (50 iterations in 0.47 seconds) Iteration 950: error is 1.152893 (50 iterations in 0.30 seconds) Iteration 1000: error is 1.151785 (50 iterations in 0.33 seconds) Fitting performed in 9.64 seconds. == testthat results =========================================================== OK: 72 SKIPPED: 0 FAILED: 0 > > proc.time() user system elapsed 35.32 0.59 35.90 |
Sconify.Rcheck/examples_i386/Sconify-Ex.timings
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Sconify.Rcheck/examples_x64/Sconify-Ex.timings
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