Back to Multiple platform build/check report for BioC 3.7 |
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This page was generated on 2018-10-17 08:39:37 -0400 (Wed, 17 Oct 2018).
Package 1276/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
Rqc 1.14.0 Welliton Souza
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | [ OK ] | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: Rqc |
Version: 1.14.0 |
Command: rm -rf Rqc.buildbin-libdir && mkdir Rqc.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Rqc.buildbin-libdir Rqc_1.14.0.tar.gz |
StartedAt: 2018-10-17 06:55:31 -0400 (Wed, 17 Oct 2018) |
EndedAt: 2018-10-17 06:56:35 -0400 (Wed, 17 Oct 2018) |
EllapsedTime: 63.6 seconds |
RetCode: 0 |
Status: OK |
PackageFile: Rqc_1.14.0.zip |
PackageFileSize: 1.183 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf Rqc.buildbin-libdir && mkdir Rqc.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Rqc.buildbin-libdir Rqc_1.14.0.tar.gz ### ############################################################################## ############################################################################## install for i386 * installing *source* package 'Rqc' ... ** libs C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c RRDNA.cpp -o RRDNA.o RRDNA.cpp: In function 'Rcpp::StringVector toRRDNA(Rcpp::StringVector)': RRDNA.cpp:51:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (j = 0; j < dna.size(); j+=3) ^ RRDNA.cpp: In function 'Rcpp::StringVector fromRRDNA(Rcpp::StringVector)': RRDNA.cpp:102:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(j = 1; j < rrdna.size(); ++j) { ^ C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c RcppExports.cpp -o RcppExports.o C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o Rqc.dll tmp.def RRDNA.o RcppExports.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/Rqc.buildbin-libdir/Rqc/libs/i386 ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'Rqc' finding HTML links ... done Rqc-package html RqcResultSet-class html checkpoint html detectFileFormat html fromRRDNA html matdist html rqc html finding level-2 HTML links ... done rqcCycleAverageQualityPcaPlot html rqcCycleAverageQualityPlot html rqcCycleBaseCallsPlot html rqcCycleGCPlot html rqcCycleQualityBoxPlot html rqcCycleQualityPlot html rqcFileHeatmap html rqcGroupCycleAverageQualityPlot html rqcQA html Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpQDqKxk/R.INSTALL21c03c163505/Rqc/man/rqcQA.Rd:65: file link 'FastqFile' in package 'ShortRead' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpQDqKxk/R.INSTALL21c03c163505/Rqc/man/rqcQA.Rd:66: file link 'BamFile' in package 'Rsamtools' does not exist and so has been treated as a topic rqcReadFrequencyPlot html rqcReadQualityBoxPlot html rqcReadQualityPlot html rqcReadWidthPlot html rqcReport html rqcShinyReport html stats4trim html subsetByGroup html subsetByPair html toRRDNA html ** building package indices ** installing vignettes ** testing if installed package can be loaded In R CMD INSTALL install for x64 * installing *source* package 'Rqc' ... ** libs C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c RRDNA.cpp -o RRDNA.o RRDNA.cpp: In function 'Rcpp::StringVector toRRDNA(Rcpp::StringVector)': RRDNA.cpp:51:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (j = 0; j < dna.size(); j+=3) ^ RRDNA.cpp: In function 'Rcpp::StringVector fromRRDNA(Rcpp::StringVector)': RRDNA.cpp:102:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(j = 1; j < rrdna.size(); ++j) { ^ C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c RcppExports.cpp -o RcppExports.o C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o Rqc.dll tmp.def RRDNA.o RcppExports.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/Rqc.buildbin-libdir/Rqc/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'Rqc' as Rqc_1.14.0.zip * DONE (Rqc) In R CMD INSTALL In R CMD INSTALL