| Back to Multiple platform build/check report for BioC 3.7 |
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This page was generated on 2018-10-17 08:36:28 -0400 (Wed, 17 Oct 2018).
| Package 1252/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| RMassBank 2.8.0 RMassBank at Eawag
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | ERROR | |||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | [ ERROR ] | skipped | skipped | |||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | ERROR | skipped | skipped |
| Package: RMassBank |
| Version: 2.8.0 |
| Command: chmod a+r RMassBank -R && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data RMassBank |
| StartedAt: 2018-10-16 21:42:13 -0400 (Tue, 16 Oct 2018) |
| EndedAt: 2018-10-16 21:45:14 -0400 (Tue, 16 Oct 2018) |
| EllapsedTime: 181.4 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### chmod a+r RMassBank -R && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data RMassBank ### ############################################################################## ############################################################################## * checking for file 'RMassBank/DESCRIPTION' ... OK * preparing 'RMassBank': * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR Loading required package: Rcpp Loaded compoundlist successfully msmsWorkflow: Step 1. Acquire all MSMS spectra from files | | | 0% | |================================ | 50% | |================================================================| 100%msmsWorkflow: Step 2. First analysis pre recalibration | | | 0% | |================================ | 50% | |================================================================| 100% msmsWorkflow: Step 3. Aggregate all spectra msmsWorkflow: Step 4. Recalibrate m/z values in raw spectra msmsWorkflow: Done. msmsWorkflow: Step 4. Recalibrate m/z values in raw spectra msmsWorkflow: Done. msmsWorkflow: Step 4. Recalibrate m/z values in raw spectra msmsWorkflow: Done. msmsWorkflow: Step 5. Reanalyze recalibrated spectra | | | 0% | |================================ | 50% | |================================================================| 100% msmsWorkflow: Step 6. Aggregate recalibrated results msmsWorkflow: Step 7. Reanalyze fail peaks for N2 + O | | | 0% | | | 1% | |= | 1% | |= | 2% | |== | 2% | |== | 3% | |== | 4% | |=== | 4% | |=== | 5% | |==== | 6% | |==== | 7% | |===== | 7% | |===== | 8% | |===== | 9% | |====== | 9% | |====== | 10% | |======= | 10% | |======= | 11% | |======= | 12% | |======== | 12% | |======== | 13% | |========= | 13% | |========= | 14% | |========= | 15% | |========== | 15% | |========== | 16% | |=========== | 17% | |=========== | 18% | |============ | 18% | |============ | 19% | |============= | 20% | |============= | 21% | |============== | 21% | |============== | 22% | |============== | 23% | |=============== | 23% | |=============== | 24% | |================ | 24% | |================ | 25% | |================ | 26% | |================= | 26% | |================= | 27% | |================== | 27% | |================== | 28% | |================== | 29% | |=================== | 29% | |=================== | 30% | |==================== | 31% | |==================== | 32% | 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Peak multiplicity filtering msmsWorkflow: Done. mbWorkflow: Step 1. Gather info from several databases Error: processing vignette 'RMassBank.Rnw' failed with diagnostics: chunk 22 Error in fromJSON(data) : no data to parse Execution halted