Astrid Deschênes
| Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018) |
| URL: https://git.bioconductor.org/packages/RJMCMCNucleosomes |
| Branch: RELEASE_3_7 |
| Last Commit: ff1e842 |
| Last Changed Date: 2018-04-30 10:35:44 -0400 (Mon, 30 Apr 2018) |
| Back to Multiple platform build/check report for BioC 3.7 |
|
This page was generated on 2018-10-17 08:43:19 -0400 (Wed, 17 Oct 2018).
| Package 1249/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| RJMCMCNucleosomes 1.4.0 Astrid Deschênes
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: RJMCMCNucleosomes |
| Version: 1.4.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/RJMCMCNucleosomes_1.4.0.tar.gz && rm -rf RJMCMCNucleosomes.buildbin-libdir && mkdir RJMCMCNucleosomes.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=RJMCMCNucleosomes.buildbin-libdir RJMCMCNucleosomes_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL RJMCMCNucleosomes_1.4.0.zip && rm RJMCMCNucleosomes_1.4.0.tar.gz RJMCMCNucleosomes_1.4.0.zip |
| StartedAt: 2018-10-16 19:59:40 -0400 (Tue, 16 Oct 2018) |
| EndedAt: 2018-10-16 20:01:36 -0400 (Tue, 16 Oct 2018) |
| EllapsedTime: 115.3 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/RJMCMCNucleosomes_1.4.0.tar.gz && rm -rf RJMCMCNucleosomes.buildbin-libdir && mkdir RJMCMCNucleosomes.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=RJMCMCNucleosomes.buildbin-libdir RJMCMCNucleosomes_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL RJMCMCNucleosomes_1.4.0.zip && rm RJMCMCNucleosomes_1.4.0.tar.gz RJMCMCNucleosomes_1.4.0.zip
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install for i386
* installing *source* package 'RJMCMCNucleosomes' ...
** libs
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I/i386/include -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c NucleoDirichlet.cpp -o NucleoDirichlet.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I/i386/include -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c NucleoDirichletPA.cpp -o NucleoDirichletPA.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I/i386/include -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c Nucleosome.cpp -o Nucleosome.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I/i386/include -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c RJMCMCNucleosomes_init.c -o RJMCMCNucleosomes_init.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I/i386/include -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I/i386/include -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c SegmentSeq.cpp -o SegmentSeq.o
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I/i386/include -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c rjmcmcNucleo.cpp -o rjmcmcNucleo.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o RJMCMCNucleosomes.dll tmp.def NucleoDirichlet.o NucleoDirichletPA.o Nucleosome.o RJMCMCNucleosomes_init.o RcppExports.o SegmentSeq.o rjmcmcNucleo.o -L/i386/lib -lgsl -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/RJMCMCNucleosomes.buildbin-libdir/RJMCMCNucleosomes/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'RJMCMCNucleosomes'
finding HTML links ... done
RJMCMCNucleosomes-package html
RJMCMC_result html
mergeAllRDSFiles html
mergeAllRDSFilesFromDirectory html
mergeRDSFiles html
plotNucleosomes html
postMerge html
postTreatment html
print.rjmcmcNucleosomes html
print.rjmcmcNucleosomesBeforeAndAfterPostTreatment
html
print.rjmcmcNucleosomesMerge html
reads_demo_01 html
reads_demo_02 html
rjmcmc html
rjmcmcCHR html
rjmcmcNucleo html
runCHR html
segmentation html
syntheticNucleosomeReads html
validateDirectoryParameters html
validatePlotNucleosomesParameters html
validatePrepMergeParameters html
validateRDSFilesParameters html
validateRJMCMCParameters html
validateSegmentationParameters html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'RJMCMCNucleosomes' ...
** libs
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I/x64/include -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c NucleoDirichlet.cpp -o NucleoDirichlet.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I/x64/include -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c NucleoDirichletPA.cpp -o NucleoDirichletPA.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I/x64/include -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c Nucleosome.cpp -o Nucleosome.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I/x64/include -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c RJMCMCNucleosomes_init.c -o RJMCMCNucleosomes_init.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I/x64/include -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I/x64/include -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c SegmentSeq.cpp -o SegmentSeq.o
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I/x64/include -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c rjmcmcNucleo.cpp -o rjmcmcNucleo.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o RJMCMCNucleosomes.dll tmp.def NucleoDirichlet.o NucleoDirichletPA.o Nucleosome.o RJMCMCNucleosomes_init.o RcppExports.o SegmentSeq.o rjmcmcNucleo.o -L/x64/lib -lgsl -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/RJMCMCNucleosomes.buildbin-libdir/RJMCMCNucleosomes/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'RJMCMCNucleosomes' as RJMCMCNucleosomes_1.4.0.zip
* DONE (RJMCMCNucleosomes)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'RJMCMCNucleosomes' successfully unpacked and MD5 sums checked
In R CMD INSTALL