Yinan Zheng
| Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018) |
| URL: https://git.bioconductor.org/packages/REMP |
| Branch: RELEASE_3_7 |
| Last Commit: 4dd31e1 |
| Last Changed Date: 2018-08-12 16:09:52 -0400 (Sun, 12 Aug 2018) |
| Back to Multiple platform build/check report for BioC 3.7 |
|
This page was generated on 2018-10-17 08:29:53 -0400 (Wed, 17 Oct 2018).
| Package 1220/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| REMP 1.4.1 Yinan Zheng
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | [ OK ] | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: REMP |
| Version: 1.4.1 |
| Command: /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD check --install=check:REMP.install-out.txt --library=/home/biocbuild/bbs-3.7-bioc/R/library --no-vignettes --timings REMP_1.4.1.tar.gz |
| StartedAt: 2018-10-16 03:11:05 -0400 (Tue, 16 Oct 2018) |
| EndedAt: 2018-10-16 03:30:17 -0400 (Tue, 16 Oct 2018) |
| EllapsedTime: 1152.2 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: REMP.Rcheck |
| Warnings: 0 |
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### Running command:
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### /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD check --install=check:REMP.install-out.txt --library=/home/biocbuild/bbs-3.7-bioc/R/library --no-vignettes --timings REMP_1.4.1.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.7-bioc/meat/REMP.Rcheck’
* using R version 3.5.1 Patched (2018-07-12 r74967)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘REMP/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘REMP’ version ‘1.4.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘REMP’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
remp 13.332 1.120 13.942
remprofile 13.388 0.664 16.826
GRannot 12.564 0.284 15.594
initREMP 9.980 0.516 12.885
fetchRMSK 5.060 0.236 9.459
grooMethy 4.548 0.112 9.043
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
REMP.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD INSTALL REMP ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.7-bioc/R/library’ * installing *source* package ‘REMP’ ... ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (REMP)
REMP.Rcheck/REMP-Ex.timings
| name | user | system | elapsed | |
| GRannot | 12.564 | 0.284 | 15.594 | |
| REMParcel-class | 0.004 | 0.000 | 0.002 | |
| REMProduct-class | 0.000 | 0.004 | 0.002 | |
| fetchRMSK | 5.060 | 0.236 | 9.459 | |
| fetchRefSeqGene | 2.292 | 0.124 | 4.443 | |
| findRECpG | 0.952 | 0.284 | 1.239 | |
| getBackend | 0.068 | 0.748 | 0.846 | |
| getGM12878 | 3.792 | 0.296 | 4.379 | |
| grooMethy | 4.548 | 0.112 | 9.043 | |
| initREMP | 9.980 | 0.516 | 12.885 | |
| options | 0.000 | 0.000 | 0.002 | |
| remp | 13.332 | 1.120 | 13.942 | |
| remprofile | 13.388 | 0.664 | 16.826 | |