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This page was generated on 2018-10-17 08:40:00 -0400 (Wed, 17 Oct 2018).
| Package 1143/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| ProtGenerics 1.12.0 Laurent Gatto
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | |||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ WARNINGS ] | OK | |||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
| Package: ProtGenerics |
| Version: 1.12.0 |
| Command: C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:ProtGenerics.install-out.txt --library=C:\Users\biocbuild\bbs-3.7-bioc\R\library --no-vignettes --timings ProtGenerics_1.12.0.tar.gz |
| StartedAt: 2018-10-17 04:06:59 -0400 (Wed, 17 Oct 2018) |
| EndedAt: 2018-10-17 04:07:21 -0400 (Wed, 17 Oct 2018) |
| EllapsedTime: 21.6 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: ProtGenerics.Rcheck |
| Warnings: 1 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:ProtGenerics.install-out.txt --library=C:\Users\biocbuild\bbs-3.7-bioc\R\library --no-vignettes --timings ProtGenerics_1.12.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.7-bioc/meat/ProtGenerics.Rcheck' * using R version 3.5.1 Patched (2018-07-24 r75005) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'ProtGenerics/DESCRIPTION' ... OK * this is package 'ProtGenerics' version '1.12.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'ProtGenerics' can be installed ... WARNING Found the following significant warnings: Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpELi3F7/R.INSTALLd8c5e8d396/ProtGenerics/man/protgenerics.Rd:129: file link 'selectMethod' in package 'methods' does not exist and so has been treated as a topic See 'C:/Users/biocbuild/bbs-3.7-bioc/meat/ProtGenerics.Rcheck/00install.out' for details. * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking examples ... ** running examples for arch 'i386' ... OK ** running examples for arch 'x64' ... OK * checking PDF version of manual ... OK * DONE Status: 1 WARNING See 'C:/Users/biocbuild/bbs-3.7-bioc/meat/ProtGenerics.Rcheck/00check.log' for details.
ProtGenerics.Rcheck/00install.out
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/ProtGenerics_1.12.0.tar.gz && rm -rf ProtGenerics.buildbin-libdir && mkdir ProtGenerics.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ProtGenerics.buildbin-libdir ProtGenerics_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL ProtGenerics_1.12.0.zip && rm ProtGenerics_1.12.0.tar.gz ProtGenerics_1.12.0.zip
###
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install for i386
* installing *source* package 'ProtGenerics' ...
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'ProtGenerics'
finding HTML links ... done
protgenerics html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpELi3F7/R.INSTALLd8c5e8d396/ProtGenerics/man/protgenerics.Rd:129: file link 'selectMethod' in package 'methods' does not exist and so has been treated as a topic
** building package indices
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'ProtGenerics' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ProtGenerics' as ProtGenerics_1.12.0.zip
* DONE (ProtGenerics)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'ProtGenerics' successfully unpacked and MD5 sums checked
In R CMD INSTALL
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ProtGenerics.Rcheck/examples_i386/ProtGenerics-Ex.timings
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ProtGenerics.Rcheck/examples_x64/ProtGenerics-Ex.timings
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