Back to Multiple platform build/check report for BioC 3.7 |
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This page was generated on 2018-10-17 08:33:34 -0400 (Wed, 17 Oct 2018).
Package 1044/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
OutlierD 1.44.0 Sukwoo Kim
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: OutlierD |
Version: 1.44.0 |
Command: C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:OutlierD.install-out.txt --library=C:\Users\biocbuild\bbs-3.7-bioc\R\library --no-vignettes --timings OutlierD_1.44.0.tar.gz |
StartedAt: 2018-10-17 03:48:47 -0400 (Wed, 17 Oct 2018) |
EndedAt: 2018-10-17 03:50:12 -0400 (Wed, 17 Oct 2018) |
EllapsedTime: 85.1 seconds |
RetCode: 0 |
Status: OK |
CheckDir: OutlierD.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:OutlierD.install-out.txt --library=C:\Users\biocbuild\bbs-3.7-bioc\R\library --no-vignettes --timings OutlierD_1.44.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.7-bioc/meat/OutlierD.Rcheck' * using R version 3.5.1 Patched (2018-07-24 r75005) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'OutlierD/DESCRIPTION' ... OK * this is package 'OutlierD' version '1.44.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'OutlierD' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE 'library' or 'require' calls to packages already attached by Depends: 'Biobase' 'quantreg' Please remove these calls from your code. Packages in Depends field not imported from: 'Biobase' 'quantreg' These packages need to be imported from (in the NAMESPACE file) for when this namespace is loaded but not attached. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE NB: .First.lib is obsolete and will not be used in R >= 3.0.0 File 'OutlierD/R/OutlierD.R': .First.lib calls: require(Biobase) Package startup functions should not change the search path. See section 'Good practice' in '?.onAttach'. .First.lib: no visible global function definition for 'addVigs2WinMenu' quant.const: no visible global function definition for 'quantile' quant.linear: no visible global function definition for 'rq' quant.nonlin: no visible global function definition for 'nlrq' quant.nonlin: no visible global function definition for 'predict' quant.nonpar: no visible global function definition for 'rqss' Undefined global functions or variables: addVigs2WinMenu nlrq predict quantile rq rqss Consider adding importFrom("stats", "predict", "quantile") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK Examples with CPU or elapsed time > 5s user system elapsed OutlierD 2.04 0.02 15.86 ** running examples for arch 'x64' ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See 'C:/Users/biocbuild/bbs-3.7-bioc/meat/OutlierD.Rcheck/00check.log' for details.
OutlierD.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/OutlierD_1.44.0.tar.gz && rm -rf OutlierD.buildbin-libdir && mkdir OutlierD.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=OutlierD.buildbin-libdir OutlierD_1.44.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL OutlierD_1.44.0.zip && rm OutlierD_1.44.0.tar.gz OutlierD_1.44.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 16164 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 16164 100 16164 0 0 290k 0 --:--:-- --:--:-- --:--:-- 322k install for i386 * installing *source* package 'OutlierD' ... ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'OutlierD' finding HTML links ... done OutlierD html lcms html ** building package indices ** installing vignettes ** testing if installed package can be loaded In R CMD INSTALL install for x64 * installing *source* package 'OutlierD' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'OutlierD' as OutlierD_1.44.0.zip * DONE (OutlierD) In R CMD INSTALL In R CMD INSTALL * installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library' package 'OutlierD' successfully unpacked and MD5 sums checked In R CMD INSTALL
OutlierD.Rcheck/examples_i386/OutlierD-Ex.timings
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OutlierD.Rcheck/examples_x64/OutlierD-Ex.timings
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