Back to Multiple platform build/check report for BioC 3.7 |
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This page was generated on 2018-10-17 08:46:55 -0400 (Wed, 17 Oct 2018).
Package 1009/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
OCplus 1.54.0 Alexander Ploner
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | [ OK ] | OK |
Package: OCplus |
Version: 1.54.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:OCplus.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings OCplus_1.54.0.tar.gz |
StartedAt: 2018-10-16 23:00:05 -0400 (Tue, 16 Oct 2018) |
EndedAt: 2018-10-16 23:01:29 -0400 (Tue, 16 Oct 2018) |
EllapsedTime: 84.4 seconds |
RetCode: 0 |
Status: OK |
CheckDir: OCplus.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:OCplus.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings OCplus_1.54.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.7-bioc/meat/OCplus.Rcheck’ * using R version 3.5.1 Patched (2018-07-12 r74967) * using platform: x86_64-apple-darwin15.6.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘OCplus/DESCRIPTION’ ... OK * this is package ‘OCplus’ version ‘1.54.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘OCplus’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU or elapsed time > 5s user system elapsed samplesize 7.081 0.441 7.602 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
OCplus.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL OCplus ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/3.5/Resources/library’ * installing *source* package ‘OCplus’ ... ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (OCplus)
OCplus.Rcheck/OCplus-Ex.timings
name | user | system | elapsed | |
EOC | 0.414 | 0.150 | 0.570 | |
FDR | 0.006 | 0.001 | 0.007 | |
MAsim.smyth | 0.238 | 0.056 | 0.296 | |
OCshow | 0.930 | 0.272 | 1.211 | |
TOC | 0.345 | 0.028 | 0.378 | |
average.fdr | 0.833 | 0.231 | 1.074 | |
fdr1d | 0.389 | 0.103 | 0.500 | |
fdr2d | 0.607 | 0.126 | 0.737 | |
plot.FDR.result | 0.112 | 0.034 | 0.148 | |
plot.fdr1d.result | 0.393 | 0.105 | 0.502 | |
plot.fdr2d.result | 0.547 | 0.124 | 0.677 | |
samplesize | 7.081 | 0.441 | 7.602 | |
smooth1d | 0.055 | 0.009 | 0.064 | |
summary.fdr.result | 0.377 | 0.108 | 0.494 | |
tMixture | 4.183 | 0.381 | 4.620 | |