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This page was generated on 2018-10-17 08:48:32 -0400 (Wed, 17 Oct 2018).
Package 944/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
MotIV 1.36.0 Eloi Mercier
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | WARNINGS | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | [ OK ] | OK | WARNINGS | OK |
Package: MotIV |
Version: 1.36.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL MotIV |
StartedAt: 2018-10-16 15:53:44 -0400 (Tue, 16 Oct 2018) |
EndedAt: 2018-10-16 15:54:13 -0400 (Tue, 16 Oct 2018) |
EllapsedTime: 29.0 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL MotIV ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/3.5/Resources/library’ * installing *source* package ‘MotIV’ ... checking for gcc... clang checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether clang accepts -g... yes checking for clang option to accept ISO C89... none needed checking for gsl-config... /usr/local/bin/gsl-config checking for GSL - version >= 1.6... yes configure: creating ./config.status config.status: creating src/Makevars ** libs clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c Alignment.cpp -o Alignment.o Alignment.cpp:176:17: warning: unused variable 'score2' [-Wunused-variable] double score1, score2, bestScore=0; ^ Alignment.cpp:177:18: warning: unused variable 'i1_B' [-Wunused-variable] int i1_A, i2_A, i1_B, i2_B; ^ Alignment.cpp:185:9: warning: unused variable 'currTwo' [-Wunused-variable] Motif* currTwo = two; ^ Alignment.cpp:178:12: warning: unused variable 'aL_B' [-Wunused-variable] int aL_A, aL_B; ^ Alignment.cpp:179:14: warning: unused variable 'for_B' [-Wunused-variable] bool for_A, for_B; ^ Alignment.cpp:177:24: warning: unused variable 'i2_B' [-Wunused-variable] int i1_A, i2_A, i1_B, i2_B; ^ 6 warnings generated. clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c ColumnComp.cpp -o ColumnComp.o clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c DeclareAll.cpp -o DeclareAll.o clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c Motif.cpp -o Motif.o clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c MotifDistances.cpp -o MotifDistances.o MotifDistances.cpp:115:2: warning: delete called on 'ColumnComp' that is abstract but has non-virtual destructor [-Wdelete-non-virtual-dtor] delete(CC); ^ 1 warning generated. clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c MotifMatch.cpp -o MotifMatch.o MotifMatch.cpp:120:2: warning: delete called on 'ColumnComp' that is abstract but has non-virtual destructor [-Wdelete-non-virtual-dtor] delete(CC); ^ 1 warning generated. clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c PlatformSupport.cpp -o PlatformSupport.o PlatformSupport.cpp:156:10: warning: explicitly assigning value of variable of type 'int' to itself [-Wself-assign] currCnt=currCnt; ˜˜˜˜˜˜˜^˜˜˜˜˜˜˜ PlatformSupport.cpp:112:11: warning: variable 'input' is used uninitialized whenever 'if' condition is false [-Wsometimes-uninitialized] else if (inputDB!=0) ^˜˜˜˜˜˜˜˜˜ PlatformSupport.cpp:126:22: note: uninitialized use occurs here inputName=GET_NAMES(input); ^˜˜˜˜ /Library/Frameworks/R.framework/Resources/include/Rdefines.h:149:36: note: expanded from macro 'GET_NAMES' #define GET_NAMES(x) Rf_getAttrib(x, R_NamesSymbol) ^ PlatformSupport.cpp:112:7: note: remove the 'if' if its condition is always true else if (inputDB!=0) ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜ PlatformSupport.cpp:103:23: note: initialize the variable 'input' to silence this warning SEXP inputName, input; ^ = NULL 2 warnings generated. clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c RandPSSMGen.cpp -o RandPSSMGen.o clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c generateScoresDB.cpp -o generateScoresDB.o generateScoresDB.cpp:127:2: warning: delete called on 'ColumnComp' that is abstract but has non-virtual destructor [-Wdelete-non-virtual-dtor] delete(CC); ^ 1 warning generated. clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o MotIV.so Alignment.o ColumnComp.o DeclareAll.o Motif.o MotifDistances.o MotifMatch.o PlatformSupport.o RandPSSMGen.o generateScoresDB.o -lgsl -lgslcblas -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Library/Frameworks/R.framework/Versions/3.5/Resources/library/MotIV/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading Creating a new generic function for ‘filter’ in package ‘MotIV’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (MotIV)