Stefano de Pretis
| Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018) |
| URL: https://git.bioconductor.org/packages/LowMACA |
| Branch: RELEASE_3_7 |
| Last Commit: c9c3a67 |
| Last Changed Date: 2018-04-30 10:35:36 -0400 (Mon, 30 Apr 2018) |
| Back to Multiple platform build/check report for BioC 3.7 |
|
This page was generated on 2018-10-17 08:40:13 -0400 (Wed, 17 Oct 2018).
| Package 801/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| LowMACA 1.12.0 Stefano de Pretis
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: LowMACA |
| Version: 1.12.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/LowMACA_1.12.0.tar.gz && rm -rf LowMACA.buildbin-libdir && mkdir LowMACA.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=LowMACA.buildbin-libdir LowMACA_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL LowMACA_1.12.0.zip && rm LowMACA_1.12.0.tar.gz LowMACA_1.12.0.zip |
| StartedAt: 2018-10-16 20:09:04 -0400 (Tue, 16 Oct 2018) |
| EndedAt: 2018-10-16 20:10:59 -0400 (Tue, 16 Oct 2018) |
| EllapsedTime: 115.0 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/LowMACA_1.12.0.tar.gz && rm -rf LowMACA.buildbin-libdir && mkdir LowMACA.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=LowMACA.buildbin-libdir LowMACA_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL LowMACA_1.12.0.zip && rm LowMACA_1.12.0.tar.gz LowMACA_1.12.0.zip
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install for i386
* installing *source* package 'LowMACA' ...
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'LowMACA'
finding HTML links ... done
BLOSUM62 html
LowMACA-class html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpyaagpE/R.INSTALL20585497385/LowMACA/man/LowMACA-class.Rd:62: file link 'AAMultipleAlignment' in package 'Biostrings' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpyaagpE/R.INSTALL20585497385/LowMACA/man/LowMACA-class.Rd:71: file link 'getMutationData' in package 'cgdsr' does not exist and so has been treated as a topic
LowMACA-package html
LowMACA_AML html
alignSequences html
allPfamAnalysis html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpyaagpE/R.INSTALL20585497385/LowMACA/man/allPfamAnalysis.Rd:52: file link 'BiocParallelParam' in package 'BiocParallel' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpyaagpE/R.INSTALL20585497385/LowMACA/man/allPfamAnalysis.Rd:54: file link 'bpparam' in package 'BiocParallel' does not exist and so has been treated as a topic
bpAll html
entropy html
getMutations html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpyaagpE/R.INSTALL20585497385/LowMACA/man/getMutations.Rd:20: file link 'getMutationData' in package 'cgdsr' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpyaagpE/R.INSTALL20585497385/LowMACA/man/getMutations.Rd:32: file link 'getMutationData' in package 'cgdsr' does not exist and so has been treated as a topic
lfm html
lfmSingleSequence html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpyaagpE/R.INSTALL20585497385/LowMACA/man/lfmSingleSequence.Rd:29: file link 'BiocParallelParam' in package 'BiocParallel' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpyaagpE/R.INSTALL20585497385/LowMACA/man/lfmSingleSequence.Rd:31: file link 'bpparam' in package 'BiocParallel' does not exist and so has been treated as a topic
lmAlignment html
lmEntropy html
lmMutations html
lmObj html
lmParams html
lmPlot html
lmPlotSingleSequence html
mapMutations html
newLowMACA html
nullProfile html
parallelize html
protter html
setup html
showTumorType html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpyaagpE/R.INSTALL20585497385/LowMACA/man/showTumorType.Rd:19: file link 'getCancerStudies' in package 'cgdsr' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpyaagpE/R.INSTALL20585497385/LowMACA/man/showTumorType.Rd:26: file link 'getCancerStudies' in package 'cgdsr' does not exist and so has been treated as a topic
** building package indices
** installing vignettes
** testing if installed package can be loaded
Checking if clustalo is in the PATH...
Checking clustalo Version...
Checking perl installation...
Checking perl modules XML::Simple and LWP...
In R CMD INSTALL
install for x64
* installing *source* package 'LowMACA' ...
** testing if installed package can be loaded
Checking if clustalo is in the PATH...
Checking clustalo Version...
Checking perl installation...
Checking perl modules XML::Simple and LWP...
* MD5 sums
packaged installation of 'LowMACA' as LowMACA_1.12.0.zip
* DONE (LowMACA)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'LowMACA' successfully unpacked and MD5 sums checked
In R CMD INSTALL