Back to Multiple platform build/check report for BioC 3.7 |
|
This page was generated on 2018-10-17 08:44:23 -0400 (Wed, 17 Oct 2018).
Package 751/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
IrisSpatialFeatures 1.4.0 Daniel Gusenleitner
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | ERROR | skipped | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | ERROR | skipped | skipped | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | ERROR | skipped | skipped |
Package: IrisSpatialFeatures |
Version: 1.4.0 |
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/IrisSpatialFeatures_1.4.0.tar.gz && rm -rf IrisSpatialFeatures.buildbin-libdir && mkdir IrisSpatialFeatures.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=IrisSpatialFeatures.buildbin-libdir IrisSpatialFeatures_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL IrisSpatialFeatures_1.4.0.zip && rm IrisSpatialFeatures_1.4.0.tar.gz IrisSpatialFeatures_1.4.0.zip |
StartedAt: 2018-10-16 20:40:19 -0400 (Tue, 16 Oct 2018) |
EndedAt: 2018-10-16 20:42:22 -0400 (Tue, 16 Oct 2018) |
EllapsedTime: 122.7 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/IrisSpatialFeatures_1.4.0.tar.gz && rm -rf IrisSpatialFeatures.buildbin-libdir && mkdir IrisSpatialFeatures.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=IrisSpatialFeatures.buildbin-libdir IrisSpatialFeatures_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL IrisSpatialFeatures_1.4.0.zip && rm IrisSpatialFeatures_1.4.0.tar.gz IrisSpatialFeatures_1.4.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 2100k 100 2100k 0 0 22.2M 0 --:--:-- --:--:-- --:--:-- 23.8M install for i386 * installing *source* package 'IrisSpatialFeatures' ... ** libs C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c RcppExports.cpp -o RcppExports.o C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c interaction.cpp -o interaction.o C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c masking.cpp -o masking.o C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o IrisSpatialFeatures.dll tmp.def RcppExports.o interaction.o masking.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/IrisSpatialFeatures.buildbin-libdir/IrisSpatialFeatures/libs/i386 ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'IrisSpatialFeatures' finding HTML links ... done Coordinate-class html ImageSet-class html IrisSpatialFeatures-package html IrisSpatialFeatures_data html Sample-class html as.data.frame html collapse_markers html extract_ROI html extract_features html extract_interactions html extract_mask html extract_nearest_neighbor html extract_proximity html feature_selection html get_all_interactions html get_all_nearest_neighbors html get_all_proximities html get_count_ratios html get_counts_per_mm2 html get_counts_per_mm2_noncollapsed html get_interactions html get_nearest_neighbors html get_proximities html interaction_maps html neighbor_ray_plot html overview_plot html plot html plot_interactions html plot_nearest_neighbor html plot_proximities html raw_data-class html rayplot_single_coordinate html read_raw html threshold_dataset html ** building package indices ** installing vignettes 'IrisSpatialFeatures.Rmd' using 'UTF-8' ** testing if installed package can be loaded In R CMD INSTALL install for x64 * installing *source* package 'IrisSpatialFeatures' ... ** libs C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c RcppExports.cpp -o RcppExports.o C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c interaction.cpp -o interaction.o C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.7-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c masking.cpp -o masking.o C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o IrisSpatialFeatures.dll tmp.def RcppExports.o interaction.o masking.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/IrisSpatialFeatures.buildbin-libdir/IrisSpatialFeatures/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'IrisSpatialFeatures' as IrisSpatialFeatures_1.4.0.zip * DONE (IrisSpatialFeatures) In R CMD INSTALL In R CMD INSTALL * installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library' package 'IrisSpatialFeatures' successfully unpacked and MD5 sums checked In R CMD INSTALL