Back to Multiple platform build/check report for BioC 3.7 |
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This page was generated on 2018-10-17 08:35:31 -0400 (Wed, 17 Oct 2018).
Package 719/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
IdMappingRetrieval 1.28.0 Alex Lisovich
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: IdMappingRetrieval |
Version: 1.28.0 |
Command: C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:IdMappingRetrieval.install-out.txt --library=C:\Users\biocbuild\bbs-3.7-bioc\R\library --no-vignettes --timings IdMappingRetrieval_1.28.0.tar.gz |
StartedAt: 2018-10-17 02:45:34 -0400 (Wed, 17 Oct 2018) |
EndedAt: 2018-10-17 02:48:14 -0400 (Wed, 17 Oct 2018) |
EllapsedTime: 159.8 seconds |
RetCode: 0 |
Status: OK |
CheckDir: IdMappingRetrieval.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:IdMappingRetrieval.install-out.txt --library=C:\Users\biocbuild\bbs-3.7-bioc\R\library --no-vignettes --timings IdMappingRetrieval_1.28.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.7-bioc/meat/IdMappingRetrieval.Rcheck' * using R version 3.5.1 Patched (2018-07-24 r75005) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'IdMappingRetrieval/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'IdMappingRetrieval' version '1.28.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... NOTE Found the following hidden files and directories: .BBSoptions These were most likely included in error. See section 'Package structure' in the 'Writing R Extensions' manual. * checking for portable file names ... OK * checking whether package 'IdMappingRetrieval' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... NOTE Malformed Description field: should contain one or more complete sentences. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE Packages in Depends field not imported from: 'RCurl' 'XML' These packages need to be imported from (in the NAMESPACE file) for when this namespace is loaded but not attached. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK ** running examples for arch 'x64' ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 3 NOTEs See 'C:/Users/biocbuild/bbs-3.7-bioc/meat/IdMappingRetrieval.Rcheck/00check.log' for details.
IdMappingRetrieval.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/IdMappingRetrieval_1.28.0.tar.gz && rm -rf IdMappingRetrieval.buildbin-libdir && mkdir IdMappingRetrieval.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=IdMappingRetrieval.buildbin-libdir IdMappingRetrieval_1.28.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL IdMappingRetrieval_1.28.0.zip && rm IdMappingRetrieval_1.28.0.tar.gz IdMappingRetrieval_1.28.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 34550 100 34550 0 0 542k 0 --:--:-- --:--:-- --:--:-- 613k install for i386 * installing *source* package 'IdMappingRetrieval' ... ** R ** demo ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'IdMappingRetrieval' finding HTML links ... done Annotation html AnnotationAffx html AnnotationEnsembl html AnnotationEnsemblCsv html AnnotationEnvision html AnnotationNetAffx html Generic.Roo html IdMappingAnnotationData.root html IdMappingRetrieval-package html ServiceManager html addServices.ServiceManager html as.IdMap html as.UniquePairs html filesExist.AnnotationNetAffx html getColumns.Annotation html getColumns.AnnotationAffx html getColumns.AnnotationEnsembl html getColumns.AnnotationEnsemblCsv html getColumns.AnnotationEnvision html getDataFrame.Annotation html getDataFrameList.ServiceManager html getFolderName.Annotation html getIdMap.Annotation html getIdMapList.ServiceManager html getServiceRoot.Annotation html getServices.ServiceManager html readDF.Annotation html readDF.AnnotationAffx html readDF.AnnotationEnsembl html readDF.AnnotationEnsemblCsv html readDF.AnnotationEnvision html readDF.AnnotationNetAffx html setOptions.Annotation html setServices.ServiceManager html subsetByColumn html swapKeys html ** building package indices ** installing vignettes ** testing if installed package can be loaded In R CMD INSTALL install for x64 * installing *source* package 'IdMappingRetrieval' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'IdMappingRetrieval' as IdMappingRetrieval_1.28.0.zip * DONE (IdMappingRetrieval) In R CMD INSTALL In R CMD INSTALL * installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library' package 'IdMappingRetrieval' successfully unpacked and MD5 sums checked In R CMD INSTALL
IdMappingRetrieval.Rcheck/examples_i386/IdMappingRetrieval-Ex.timings
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IdMappingRetrieval.Rcheck/examples_x64/IdMappingRetrieval-Ex.timings
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