Back to Multiple platform build/check report for BioC 3.7 |
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This page was generated on 2018-10-17 08:43:13 -0400 (Wed, 17 Oct 2018).
Package 766/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
IWTomics 1.4.0 Marzia A Cremona
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | WARNINGS | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ WARNINGS ] | OK | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK |
Package: IWTomics |
Version: 1.4.0 |
Command: C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:IWTomics.install-out.txt --library=C:\Users\biocbuild\bbs-3.7-bioc\R\library --no-vignettes --timings IWTomics_1.4.0.tar.gz |
StartedAt: 2018-10-17 02:54:42 -0400 (Wed, 17 Oct 2018) |
EndedAt: 2018-10-17 03:00:23 -0400 (Wed, 17 Oct 2018) |
EllapsedTime: 341.1 seconds |
RetCode: 0 |
Status: WARNINGS |
CheckDir: IWTomics.Rcheck |
Warnings: 2 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:IWTomics.install-out.txt --library=C:\Users\biocbuild\bbs-3.7-bioc\R\library --no-vignettes --timings IWTomics_1.4.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.7-bioc/meat/IWTomics.Rcheck' * using R version 3.5.1 Patched (2018-07-24 r75005) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'IWTomics/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'IWTomics' version '1.4.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'IWTomics' can be installed ... WARNING Found the following significant warnings: Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpcTxKig/R.INSTALL17246cd919/IWTomics/man/IWTomicsData-class.Rd:60: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpcTxKig/R.INSTALL17246cd919/IWTomics/man/IWTomicsData-class.Rd:135: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpcTxKig/R.INSTALL17246cd919/IWTomics/man/IWTomicsData-class.Rd:168: file link 'read.delim' in package 'utils' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpcTxKig/R.INSTALL17246cd919/IWTomics/man/IWTomicsData-class.Rd:308: file link 'plot' in package 'IWTomics' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpcTxKig/R.INSTALL17246cd919/IWTomics/man/IWTomicsData-class.Rd:309: file link 'smooth' in package 'IWTomics' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpcTxKig/R.INSTALL17246cd919/IWTomics/man/IWTomicsTest.Rd:61: file link 'smooth' in package 'IWTomics' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpcTxKig/R.INSTALL17246cd919/IWTomics/man/IWTomicsTest.Rd:64: file link 'smooth' in package 'IWTomics' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpcTxKig/R.INSTALL17246cd919/IWTomics/man/IWTomicsTest.Rd:79: file link 'plot' in package 'IWTomics' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpcTxKig/R.INSTALL17246cd919/IWTomics/man/IWTomicsTest.Rd:80: file link 'smooth' in package 'IWTomics' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpcTxKig/R.INSTALL17246cd919/IWTomics/man/plot-IWTomicsData.Rd:96: file link 'smooth' in package 'IWTomics' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpcTxKig/R.INSTALL17246cd919/IWTomics/man/regions_example.Rd:19: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpcTxKig/R.INSTALL17246cd919/IWTomics/man/regions_example.Rd:15: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpcTxKig/R.INSTALL17246cd919/IWTomics/man/smooth-IWTomicsData.Rd:78: file link 'plot' in package 'IWTomics' does not exist and so has been treated as a topic See 'C:/Users/biocbuild/bbs-3.7-bioc/meat/IWTomics.Rcheck/00install.out' for details. * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... WARNING Warning: package needs dependence on R (>= 2.10) * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK Examples with CPU or elapsed time > 5s user system elapsed IWTomicsTest 46.36 0.83 47.19 IWTomics-package 10.59 1.98 13.05 IWTomicsData-class 10.34 0.05 10.96 plotSummary 6.63 0.06 6.68 ** running examples for arch 'x64' ... OK Examples with CPU or elapsed time > 5s user system elapsed IWTomicsTest 65.20 1.62 66.84 IWTomics-package 11.28 1.58 12.86 IWTomicsData-class 10.32 0.02 10.33 plotSummary 7.25 0.25 7.51 plotTest 5.02 0.44 5.46 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 WARNINGs See 'C:/Users/biocbuild/bbs-3.7-bioc/meat/IWTomics.Rcheck/00check.log' for details.
IWTomics.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/IWTomics_1.4.0.tar.gz && rm -rf IWTomics.buildbin-libdir && mkdir IWTomics.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=IWTomics.buildbin-libdir IWTomics_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL IWTomics_1.4.0.zip && rm IWTomics_1.4.0.tar.gz IWTomics_1.4.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 682k 100 682k 0 0 11.3M 0 --:--:-- --:--:-- --:--:-- 12.8M install for i386 * installing *source* package 'IWTomics' ... ** R ** data ** inst ** byte-compile and prepare package for lazy loading Creating a new generic function for 'smooth' in package 'IWTomics' ** help *** installing help indices converting help for package 'IWTomics' finding HTML links ... done ETn_example html IWTomics-internal html IWTomics-package html IWTomicsData-class html Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpcTxKig/R.INSTALL17246cd919/IWTomics/man/IWTomicsData-class.Rd:60: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpcTxKig/R.INSTALL17246cd919/IWTomics/man/IWTomicsData-class.Rd:135: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpcTxKig/R.INSTALL17246cd919/IWTomics/man/IWTomicsData-class.Rd:168: file link 'read.delim' in package 'utils' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpcTxKig/R.INSTALL17246cd919/IWTomics/man/IWTomicsData-class.Rd:308: file link 'plot' in package 'IWTomics' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpcTxKig/R.INSTALL17246cd919/IWTomics/man/IWTomicsData-class.Rd:309: file link 'smooth' in package 'IWTomics' does not exist and so has been treated as a topic IWTomicsTest html Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpcTxKig/R.INSTALL17246cd919/IWTomics/man/IWTomicsTest.Rd:61: file link 'smooth' in package 'IWTomics' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpcTxKig/R.INSTALL17246cd919/IWTomics/man/IWTomicsTest.Rd:64: file link 'smooth' in package 'IWTomics' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpcTxKig/R.INSTALL17246cd919/IWTomics/man/IWTomicsTest.Rd:79: file link 'plot' in package 'IWTomics' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpcTxKig/R.INSTALL17246cd919/IWTomics/man/IWTomicsTest.Rd:80: file link 'smooth' in package 'IWTomics' does not exist and so has been treated as a topic features_example html plot-IWTomicsData html Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpcTxKig/R.INSTALL17246cd919/IWTomics/man/plot-IWTomicsData.Rd:96: file link 'smooth' in package 'IWTomics' does not exist and so has been treated as a topic plotSummary html plotTest html regionsFeatures_center html regionsFeatures_scale html regions_example html Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpcTxKig/R.INSTALL17246cd919/IWTomics/man/regions_example.Rd:19: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpcTxKig/R.INSTALL17246cd919/IWTomics/man/regions_example.Rd:15: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic smooth-IWTomicsData html Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpcTxKig/R.INSTALL17246cd919/IWTomics/man/smooth-IWTomicsData.Rd:78: file link 'plot' in package 'IWTomics' does not exist and so has been treated as a topic ** building package indices ** installing vignettes ** testing if installed package can be loaded In R CMD INSTALL install for x64 * installing *source* package 'IWTomics' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'IWTomics' as IWTomics_1.4.0.zip * DONE (IWTomics) In R CMD INSTALL In R CMD INSTALL * installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library' package 'IWTomics' successfully unpacked and MD5 sums checked In R CMD INSTALL
IWTomics.Rcheck/examples_i386/IWTomics-Ex.timings
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IWTomics.Rcheck/examples_x64/IWTomics-Ex.timings
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