Back to Multiple platform build/check report for BioC 3.7
ABCDEFG[H]IJKLMNOPQRSTUVWXYZ

BUILD BIN report for HTSanalyzeR on tokay2

This page was generated on 2018-10-17 08:34:53 -0400 (Wed, 17 Oct 2018).

Package 697/1561HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
HTSanalyzeR 2.32.0
Xin Wang
Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018)
URL: https://git.bioconductor.org/packages/HTSanalyzeR
Branch: RELEASE_3_7
Last Commit: b33de5f
Last Changed Date: 2018-04-30 10:35:14 -0400 (Mon, 30 Apr 2018)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  WARNINGS [ OK ]UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: HTSanalyzeR
Version: 2.32.0
Command: rm -rf HTSanalyzeR.buildbin-libdir && mkdir HTSanalyzeR.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=HTSanalyzeR.buildbin-libdir HTSanalyzeR_2.32.0.tar.gz
StartedAt: 2018-10-17 06:31:29 -0400 (Wed, 17 Oct 2018)
EndedAt: 2018-10-17 06:34:39 -0400 (Wed, 17 Oct 2018)
EllapsedTime: 189.6 seconds
RetCode: 0
Status:  OK  
PackageFile: HTSanalyzeR_2.32.0.zip
PackageFileSize: 2.983 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf HTSanalyzeR.buildbin-libdir && mkdir HTSanalyzeR.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=HTSanalyzeR.buildbin-libdir HTSanalyzeR_2.32.0.tar.gz
###
##############################################################################
##############################################################################



install for i386

* installing *source* package 'HTSanalyzeR' ...
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Warning: replacing previous import 'igraph::union' by 'GSEABase::union' when loading 'HTSanalyzeR'
** help
*** installing help indices
  converting help for package 'HTSanalyzeR'
    finding HTML links ... done
    FDRcollectionGsea                       html  
    GOGeneSets                              html  
    GSCA-class                              html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpI3Sa52/R.INSTALL9b42b0c4bd0/HTSanalyzeR/man/GSCA-class.Rd:112: file link 'writeHits' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
    GenHTSAHtmlRowUnit                      html  
    HTSanalyzeR                             html  
    HTSanalyzeR4cellHTS2                    html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpI3Sa52/R.INSTALL9b42b0c4bd0/HTSanalyzeR/man/HTSanalyzeR4cellHTS2.Rd:8: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpI3Sa52/R.INSTALL9b42b0c4bd0/HTSanalyzeR/man/HTSanalyzeR4cellHTS2.Rd:9: file link 'NWA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpI3Sa52/R.INSTALL9b42b0c4bd0/HTSanalyzeR/man/HTSanalyzeR4cellHTS2.Rd:207: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpI3Sa52/R.INSTALL9b42b0c4bd0/HTSanalyzeR/man/HTSanalyzeR4cellHTS2.Rd:218: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpI3Sa52/R.INSTALL9b42b0c4bd0/HTSanalyzeR/man/HTSanalyzeR4cellHTS2.Rd:218: file link 'NWA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
    KeggGeneSets                            html  
    NWA-class                               html  
    aggregatePvals                          html  
    analyze                                 html  
    analyzeGeneSetCollections               html  
    annotationConvertor                     html  
    appendGSTerms                           html  
    biogridDataDownload                     html  
    celAnnotationConvertor                  html  
    cellHTS2OutputStatTests                 html  
    changes                                 html  
    collectionGsea                          html  
    data-KcViab                             html  
    drosoAnnotationConvertor                html  
    duplicateRemover                        html  
    getTopGeneSets                          html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpI3Sa52/R.INSTALL9b42b0c4bd0/HTSanalyzeR/man/getTopGeneSets.Rd:10: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpI3Sa52/R.INSTALL9b42b0c4bd0/HTSanalyzeR/man/getTopGeneSets.Rd:18: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpI3Sa52/R.INSTALL9b42b0c4bd0/HTSanalyzeR/man/getTopGeneSets.Rd:27: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpI3Sa52/R.INSTALL9b42b0c4bd0/HTSanalyzeR/man/getTopGeneSets.Rd:28: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpI3Sa52/R.INSTALL9b42b0c4bd0/HTSanalyzeR/man/getTopGeneSets.Rd:32: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
    gseaPlots                               html  
    gseaScores                              html  
    htmlAttrVectorPaste                     html  
    hyperGeoTest                            html  
    interactome                             html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpI3Sa52/R.INSTALL9b42b0c4bd0/HTSanalyzeR/man/interactome.Rd:10: file link 'NWA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpI3Sa52/R.INSTALL9b42b0c4bd0/HTSanalyzeR/man/interactome.Rd:13: file link 'NWA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpI3Sa52/R.INSTALL9b42b0c4bd0/HTSanalyzeR/man/interactome.Rd:23: file link 'NWA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpI3Sa52/R.INSTALL9b42b0c4bd0/HTSanalyzeR/man/interactome.Rd:28: file link 'NWA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpI3Sa52/R.INSTALL9b42b0c4bd0/HTSanalyzeR/man/interactome.Rd:69: file link 'NWA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpI3Sa52/R.INSTALL9b42b0c4bd0/HTSanalyzeR/man/interactome.Rd:81: file link 'NWA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
    makeGSEAplots                           html  
    makeOverlapTable                        html  
    mammalAnnotationConvertor               html  
    multiHyperGeoTest                       html  
    networkAnalysis                         html  
    networkPlot                             html  
    pairwiseGsea                            html  
    pairwiseGseaPlot                        html  
    pairwisePhenoMannWhit                   html  
    paraCheck                               html  
    permutationPvalueCollectionGsea         html  
    plotEnrichMap                           html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpI3Sa52/R.INSTALL9b42b0c4bd0/HTSanalyzeR/man/plotEnrichMap.Rd:10: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpI3Sa52/R.INSTALL9b42b0c4bd0/HTSanalyzeR/man/plotEnrichMap.Rd:13: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpI3Sa52/R.INSTALL9b42b0c4bd0/HTSanalyzeR/man/plotEnrichMap.Rd:25: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpI3Sa52/R.INSTALL9b42b0c4bd0/HTSanalyzeR/man/plotEnrichMap.Rd:26: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpI3Sa52/R.INSTALL9b42b0c4bd0/HTSanalyzeR/man/plotEnrichMap.Rd:30: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
    plotGSEA                                html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpI3Sa52/R.INSTALL9b42b0c4bd0/HTSanalyzeR/man/plotGSEA.Rd:10: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpI3Sa52/R.INSTALL9b42b0c4bd0/HTSanalyzeR/man/plotGSEA.Rd:14: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpI3Sa52/R.INSTALL9b42b0c4bd0/HTSanalyzeR/man/plotGSEA.Rd:24: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpI3Sa52/R.INSTALL9b42b0c4bd0/HTSanalyzeR/man/plotGSEA.Rd:25: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpI3Sa52/R.INSTALL9b42b0c4bd0/HTSanalyzeR/man/plotGSEA.Rd:29: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
    plotSubNet                              html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpI3Sa52/R.INSTALL9b42b0c4bd0/HTSanalyzeR/man/plotSubNet.Rd:10: file link 'NWA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpI3Sa52/R.INSTALL9b42b0c4bd0/HTSanalyzeR/man/plotSubNet.Rd:23: file link 'NWA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpI3Sa52/R.INSTALL9b42b0c4bd0/HTSanalyzeR/man/plotSubNet.Rd:24: file link 'NWA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpI3Sa52/R.INSTALL9b42b0c4bd0/HTSanalyzeR/man/plotSubNet.Rd:28: file link 'NWA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
    preprocess                              html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpI3Sa52/R.INSTALL9b42b0c4bd0/HTSanalyzeR/man/preprocess.Rd:11: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpI3Sa52/R.INSTALL9b42b0c4bd0/HTSanalyzeR/man/preprocess.Rd:11: file link 'NWA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpI3Sa52/R.INSTALL9b42b0c4bd0/HTSanalyzeR/man/preprocess.Rd:15: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpI3Sa52/R.INSTALL9b42b0c4bd0/HTSanalyzeR/man/preprocess.Rd:20: file link 'NWA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpI3Sa52/R.INSTALL9b42b0c4bd0/HTSanalyzeR/man/preprocess.Rd:30: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpI3Sa52/R.INSTALL9b42b0c4bd0/HTSanalyzeR/man/preprocess.Rd:31: file link 'NWA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpI3Sa52/R.INSTALL9b42b0c4bd0/HTSanalyzeR/man/preprocess.Rd:35: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpI3Sa52/R.INSTALL9b42b0c4bd0/HTSanalyzeR/man/preprocess.Rd:35: file link 'NWA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpI3Sa52/R.INSTALL9b42b0c4bd0/HTSanalyzeR/man/preprocess.Rd:112: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpI3Sa52/R.INSTALL9b42b0c4bd0/HTSanalyzeR/man/preprocess.Rd:113: file link 'NWA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
    report                                  html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpI3Sa52/R.INSTALL9b42b0c4bd0/HTSanalyzeR/man/report.Rd:11: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpI3Sa52/R.INSTALL9b42b0c4bd0/HTSanalyzeR/man/report.Rd:11: file link 'NWA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpI3Sa52/R.INSTALL9b42b0c4bd0/HTSanalyzeR/man/report.Rd:15: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpI3Sa52/R.INSTALL9b42b0c4bd0/HTSanalyzeR/man/report.Rd:15: file link 'NWA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpI3Sa52/R.INSTALL9b42b0c4bd0/HTSanalyzeR/man/report.Rd:25: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpI3Sa52/R.INSTALL9b42b0c4bd0/HTSanalyzeR/man/report.Rd:25: file link 'NWA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpI3Sa52/R.INSTALL9b42b0c4bd0/HTSanalyzeR/man/report.Rd:26: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpI3Sa52/R.INSTALL9b42b0c4bd0/HTSanalyzeR/man/report.Rd:26: file link 'NWA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpI3Sa52/R.INSTALL9b42b0c4bd0/HTSanalyzeR/man/report.Rd:30: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpI3Sa52/R.INSTALL9b42b0c4bd0/HTSanalyzeR/man/report.Rd:30: file link 'NWA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpI3Sa52/R.INSTALL9b42b0c4bd0/HTSanalyzeR/man/report.Rd:69: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpI3Sa52/R.INSTALL9b42b0c4bd0/HTSanalyzeR/man/report.Rd:70: file link 'NWA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
    reportAll                               html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpI3Sa52/R.INSTALL9b42b0c4bd0/HTSanalyzeR/man/reportAll.Rd:10: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpI3Sa52/R.INSTALL9b42b0c4bd0/HTSanalyzeR/man/reportAll.Rd:10: file link 'NWA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpI3Sa52/R.INSTALL9b42b0c4bd0/HTSanalyzeR/man/reportAll.Rd:14: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpI3Sa52/R.INSTALL9b42b0c4bd0/HTSanalyzeR/man/reportAll.Rd:14: file link 'NWA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpI3Sa52/R.INSTALL9b42b0c4bd0/HTSanalyzeR/man/reportAll.Rd:24: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpI3Sa52/R.INSTALL9b42b0c4bd0/HTSanalyzeR/man/reportAll.Rd:27: file link 'NWA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpI3Sa52/R.INSTALL9b42b0c4bd0/HTSanalyzeR/man/reportAll.Rd:31: file link 'NWA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpI3Sa52/R.INSTALL9b42b0c4bd0/HTSanalyzeR/man/reportAll.Rd:31: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
    summarize                               html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpI3Sa52/R.INSTALL9b42b0c4bd0/HTSanalyzeR/man/summarize.Rd:14: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpI3Sa52/R.INSTALL9b42b0c4bd0/HTSanalyzeR/man/summarize.Rd:14: file link 'NWA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpI3Sa52/R.INSTALL9b42b0c4bd0/HTSanalyzeR/man/summarize.Rd:18: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpI3Sa52/R.INSTALL9b42b0c4bd0/HTSanalyzeR/man/summarize.Rd:18: file link 'NWA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpI3Sa52/R.INSTALL9b42b0c4bd0/HTSanalyzeR/man/summarize.Rd:28: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpI3Sa52/R.INSTALL9b42b0c4bd0/HTSanalyzeR/man/summarize.Rd:28: file link 'NWA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpI3Sa52/R.INSTALL9b42b0c4bd0/HTSanalyzeR/man/summarize.Rd:29: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpI3Sa52/R.INSTALL9b42b0c4bd0/HTSanalyzeR/man/summarize.Rd:29: file link 'NWA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpI3Sa52/R.INSTALL9b42b0c4bd0/HTSanalyzeR/man/summarize.Rd:33: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpI3Sa52/R.INSTALL9b42b0c4bd0/HTSanalyzeR/man/summarize.Rd:33: file link 'NWA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpI3Sa52/R.INSTALL9b42b0c4bd0/HTSanalyzeR/man/summarize.Rd:44: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpI3Sa52/R.INSTALL9b42b0c4bd0/HTSanalyzeR/man/summarize.Rd:49: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
    viewEnrichMap                           html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpI3Sa52/R.INSTALL9b42b0c4bd0/HTSanalyzeR/man/viewEnrichMap.Rd:10: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpI3Sa52/R.INSTALL9b42b0c4bd0/HTSanalyzeR/man/viewEnrichMap.Rd:13: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpI3Sa52/R.INSTALL9b42b0c4bd0/HTSanalyzeR/man/viewEnrichMap.Rd:24: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpI3Sa52/R.INSTALL9b42b0c4bd0/HTSanalyzeR/man/viewEnrichMap.Rd:25: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpI3Sa52/R.INSTALL9b42b0c4bd0/HTSanalyzeR/man/viewEnrichMap.Rd:29: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
    viewGSEA                                html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpI3Sa52/R.INSTALL9b42b0c4bd0/HTSanalyzeR/man/viewGSEA.Rd:10: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpI3Sa52/R.INSTALL9b42b0c4bd0/HTSanalyzeR/man/viewGSEA.Rd:14: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpI3Sa52/R.INSTALL9b42b0c4bd0/HTSanalyzeR/man/viewGSEA.Rd:24: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpI3Sa52/R.INSTALL9b42b0c4bd0/HTSanalyzeR/man/viewGSEA.Rd:27: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
    viewSubNet                              html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpI3Sa52/R.INSTALL9b42b0c4bd0/HTSanalyzeR/man/viewSubNet.Rd:10: file link 'NWA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpI3Sa52/R.INSTALL9b42b0c4bd0/HTSanalyzeR/man/viewSubNet.Rd:20: file link 'NWA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpI3Sa52/R.INSTALL9b42b0c4bd0/HTSanalyzeR/man/viewSubNet.Rd:25: file link 'NWA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
    writeHTSAHtmlHead                       html  
    writeHTSAHtmlSummary                    html  
    writeHTSAHtmlTab                        html  
    writeHTSAHtmlTable                      html  
    writeHTSAHtmlTail                       html  
    writeReportHTSA                         html  
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpI3Sa52/R.INSTALL9b42b0c4bd0/HTSanalyzeR/man/writeReportHTSA.Rd:8: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpI3Sa52/R.INSTALL9b42b0c4bd0/HTSanalyzeR/man/writeReportHTSA.Rd:8: file link 'NWA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpI3Sa52/R.INSTALL9b42b0c4bd0/HTSanalyzeR/man/writeReportHTSA.Rd:17: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpI3Sa52/R.INSTALL9b42b0c4bd0/HTSanalyzeR/man/writeReportHTSA.Rd:20: file link 'NWA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpI3Sa52/R.INSTALL9b42b0c4bd0/HTSanalyzeR/man/writeReportHTSA.Rd:56: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpI3Sa52/R.INSTALL9b42b0c4bd0/HTSanalyzeR/man/writeReportHTSA.Rd:57: file link 'NWA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
** building package indices
** installing vignettes
** testing if installed package can be loaded
Warning: replacing previous import 'igraph::union' by 'GSEABase::union' when loading 'HTSanalyzeR'
In R CMD INSTALL

install for x64

* installing *source* package 'HTSanalyzeR' ...
** testing if installed package can be loaded
Warning: replacing previous import 'igraph::union' by 'GSEABase::union' when loading 'HTSanalyzeR'
* MD5 sums
packaged installation of 'HTSanalyzeR' as HTSanalyzeR_2.32.0.zip
* DONE (HTSanalyzeR)
In R CMD INSTALL
In R CMD INSTALL