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BUILD BIN report for GenomicRanges on merida2

This page was generated on 2018-10-17 08:48:31 -0400 (Wed, 17 Oct 2018).

Package 597/1561HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GenomicRanges 1.32.7
Bioconductor Package Maintainer
Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018)
URL: https://git.bioconductor.org/packages/GenomicRanges
Branch: RELEASE_3_7
Last Commit: 4c56dc8
Last Changed Date: 2018-09-19 23:58:20 -0400 (Wed, 19 Sep 2018)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: GenomicRanges
Version: 1.32.7
Command: rm -rf GenomicRanges.buildbin-libdir && mkdir GenomicRanges.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh GenomicRanges_1.32.7.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R GenomicRanges.buildbin-libdir
StartedAt: 2018-10-17 01:24:39 -0400 (Wed, 17 Oct 2018)
EndedAt: 2018-10-17 01:25:33 -0400 (Wed, 17 Oct 2018)
EllapsedTime: 53.7 seconds
RetCode: 0
Status:  OK 
PackageFile: GenomicRanges_1.32.7.tgz
PackageFileSize: 1.924 MiB

Command output

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### Running command:
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###   rm -rf GenomicRanges.buildbin-libdir && mkdir GenomicRanges.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh GenomicRanges_1.32.7.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R GenomicRanges.buildbin-libdir
###
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=GenomicRanges.buildbin-libdir GenomicRanges_1.32.7.tar.gz'
>>>>>>> 

* installing *source* package ‘GenomicRanges’ ...
** libs
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/S4Vectors/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/IRanges/include" -I/usr/local/include   -fPIC  -Wall -g -O2  -c IRanges_stubs.c -o IRanges_stubs.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/S4Vectors/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/IRanges/include" -I/usr/local/include   -fPIC  -Wall -g -O2  -c R_init_GenomicRanges.c -o R_init_GenomicRanges.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/S4Vectors/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/IRanges/include" -I/usr/local/include   -fPIC  -Wall -g -O2  -c S4Vectors_stubs.c -o S4Vectors_stubs.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/S4Vectors/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/IRanges/include" -I/usr/local/include   -fPIC  -Wall -g -O2  -c transcript_utils.c -o transcript_utils.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o GenomicRanges.so IRanges_stubs.o R_init_GenomicRanges.o S4Vectors_stubs.o transcript_utils.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.7-bioc/meat/GenomicRanges.buildbin-libdir/GenomicRanges/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (GenomicRanges)


>>>>>>> 
>>>>>>> FIXING LINKS FOR GenomicRanges.buildbin-libdir/GenomicRanges/libs//GenomicRanges.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgcc_s.1.dylib" "GenomicRanges.buildbin-libdir/GenomicRanges/libs//GenomicRanges.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgfortran.3.dylib" "GenomicRanges.buildbin-libdir/GenomicRanges/libs//GenomicRanges.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libreadline.5.2.dylib" "GenomicRanges.buildbin-libdir/GenomicRanges/libs//GenomicRanges.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libreadline.dylib" "GenomicRanges.buildbin-libdir/GenomicRanges/libs//GenomicRanges.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libquadmath.0.dylib" "GenomicRanges.buildbin-libdir/GenomicRanges/libs//GenomicRanges.so"